similar to: "The Matrix" is approaching version 1.0-0

>>>>> Paul Johnson <pauljohn32 at gmail.com> >>>>> on Mon, 20 Nov 2017 14:59:26 -0600 writes: > I mistakenly left a write in "/tmp" in the rockchalk package (version > 1.8.109) that I uploaded last Friday. Kurt H wrote and asked me to fix > today. > While uploading a new one, I became aware of a problem I had not seen.

I mistakenly left a write in "/tmp" in the rockchalk package (version 1.8.109) that I uploaded last Friday. Kurt H wrote and asked me to fix today. While uploading a new one, I became aware of a problem I had not seen. The version I uploaded last Friday, 1.8.109, has OK status on all platforms except r-release-windows-ix86+x86_64. I get OK on oldrel-windows and also on devel-windows.

Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on CRAN for use with R version 2.4.0 or later. Purpose of the packages: The Matrix package provides S4 classes and methods for sparse and dense matrices. The lme4 package provides functions for fitting and assessing linear or generalized linear mixed effects models (also called multilevel models). Like the Matrix package,

Versions 0.9975-1 of the Matrix and lme4 packages will soon be available on CRAN for use with R version 2.4.0 or later. Purpose of the packages: The Matrix package provides S4 classes and methods for sparse and dense matrices. The lme4 package provides functions for fitting and assessing linear or generalized linear mixed effects models (also called multilevel models). Like the Matrix package,

Hi R-help citizens, I'm having trouble making version 0.99-6 of Matrix on FreeBSD 6.0. The error message is: * Installing *source* package 'Matrix' ... ** libs gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES -fPIC -g -O2 -c Csparse.c -o Csparse.o ... numerous lines deleted ... gcc -I/usr/local/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES

1. Martin Maechler's comments should be taken as replacements for anything I wrote where appropriate. Any apparent conflict is a result of his superior knowledge. 2. 'eigen' returns the eigenvalue decomposition assuming the matrix is symmetric, ignoring anything in m[upper.tri(m)]. 3. The basic idea behind both posdefify and nearPD is to compute the

Hi all, I have trouble to compile Matrix packages on Solar10 x86-64 with Sun compilers. I saw some postings on this but am not sure how to solve this problem. It is becoming critical as I cannot install biocLite() because of its dependency on Matrix. Could you direct me how to resolve the issue? Thanks in advance! Dongseok R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for

Hi, we have installed R-2.8.1 using the current pgi compiler (8.0.2) for AMD64 on a SLES9 system. When I try to install "Matrix" everything is fine until the last step. make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD' pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o

64-bit R-2.12.0 was installed on Sun SPARC Solaris 10. Compiler used is solstudio12.2. Attached is the configure script. I then tried to install a recommended package called Matrix. The compilation failed with the following messages, ....... CC -library=stlport4 -G -L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o

Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd

In a newly downloaded version (today) of R-2-4-0alpha, with all packages from CRAN also installed today, I get: > library(Matrix) Erro en loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) : in 'Matrix' methods specified for export, but none defined: BIC, anova, coef, confint, deviance, fitted, fixef, formula, head, lmer, logLik, mcmcsamp, plot,

Hi All, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

Hi R usrs, I want to build R-2.10.0 on HP-UX, but I got following error message: ld: Unsatisfied symbol "zgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "zherk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "ztrsm" in file

Hi, Calling gdistance::shortestPath gives me the error Error in asMethod(object) : not a symmetric matrix; consider forceSymmetric() or symmpart() The output of dput(.traceback()) is pairlist("stop(\"not a symmetric matrix; consider forceSymmetric() or symmpart()\")", "asMethod(object)", "as(Laplacian,\"symmetricMatrix\")",

Hello, I have been attempting to run a poisson glmm using lme4 for some time now and have had a lot of trouble. I would say 9 times out of 10 I receive the following warning: CHOLMOD warning: %h Error in mer_finalize(ans) : Cholmod error `not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432 My data are counts of microbe colony forming units (CFUs) collected from

Hi, I am getting a warning message when I am fitting a generalized linear mixed model (m1.2 below). CHOLMOD warning: matrix not positive definite Error in objective(.par, ...) : Cholmod error `matrix not positive definite' at file:../Supernodal/t_cholmod_super_numeric.c, line 614 Any idea? Thanks for your help, Reza > sessionInfo() R version 2.4.1 (2006-12-18) i386-pc-mingw32

Hi Everyone, I'm trying to load some C++ code using dyn.load but I'm getting unresolved symbols associated with some external libraries (CSparse). I gather this is something to do with linking as the the code compiles fine. However, I've passed -L/home/jarrod/My_Programs/SuiteSparse/CSparse/Lib -lcsparse to the complier (g++), either directly using R CMD SHLIB or as

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

I have a pretty large sparse matrix of integers: > dim(tasa) [1] 91650 37651 I need to add one to it in order to take logs, but I'm getting the following error: > tasa = log(tasa + 1) CHOLMOD error: problem too large Error in asMethod(object) : Cholmod error `problem too large' I have 2 Gb of RAM, and the current workspace is barely 300mb. Is there any workaround to this?

Dear R-users, I'm new to R, so my apologies if this question doesn't make sense. I've tried the following model in lmer, and it works perfectly: model<-lmer(aphids~densroot+zone+(1|zone/site), family=quasipoisson) But if I try the exact same model with a different variable, totmas, the model looks as follows: model<-lmer(aphids~totmas+zone+(1|zone/site), family=quasipoisson)