similar to: R-beta: multiv package on CRAN

Hallo Friedrich, I have read your announcement, downloaded and installed it in R-0.61.3. But now I have problems :) > hc <- hierclust(dist(t(pollen)), method=3) Error in pmatch(x, table) : argument is not of mode character > hc <- hclust(dist(t(pollen))) > members(hc) Error in .Fortran("assgn", n = as.integer(n), nplus1 = as.integer(nplus1), : C/Fortran function not in

I use hierclust (hierarchical clustering) in multiv package. In the documentation it is said that plclust (plotting a dendrogram) is available in S-plus. Can I find it anywhere (I have searched through http://lib.stat.cmu.edu/S and found only quotations of plclust in multiv) or is it only part of the S package (which I don't have)? Thanks --------------- Charles RAUX, Laboratoire

When I try to run the "sammon" function of the multiv package, I always get this error message: Error in as.vector(dist(a)) : couldn't find function "dist" It happens even with example(sammon). I am running R 1.5.0 on Win98 and I have still installed R 1.4.1 but it doesn't work on the old R version with the older multiv package either. Is there a problem with the

my major is bioinformatics, and i'm trying to cluster ( agglomerate the closest pari of observations ) in R. i have already got my own similarities metric, but do not know how to clust it based on similarities instead of dissimilarities. since the help document of hierclust mentions the parameter "sim", which seems good to me, but it doesn't appear in the code of hierclust()

Hi, Win95 version, trying to build multiv. Following error (no mention in faq etc, but someone may have mentioned it recently). Appreciate any help. ------- Building multiv.dll from multiv.a -------- echo LIBRARY multiv > multiv.def echo EXPORTS >> multiv.def nm multiv.a | sed -n "/^........ [DT] _/s/^........ [BCDRT] _/ /p" >> multiv.def gcc -mdll

Hi list, not really a problem to solve but a strange unwanted behavior (at least I do not like it): I'm loading library(multiv) to use sammon. Later I load library(MASS) which tells me that sammon is masked now, because there is also a MASS version of sammon. Since I believe that the MASS version is at least as good as the multiv version, I would also use the MASS version, but help(sammon)

Dear R team / R helpers / R users , I downloaded R-1.0.0 to install it but I am currently facing the following problem : Installation of packages. Here is the output I had while trying to install RmSQL : ------------- > R INSTALL -l /software/R-1.0.0/library/ /software/archive/R/RmSQL_0.2-1.tar.gz Installing package `RmSQL' ... libs RmSQL.c:7: msql.h: No such file or directory make:

Hello, I just have upgraded from Mandrake 8.1 to 8.2 and installed R 1.5.1. I now try to reinstall all the packages but get the following error (for the multiv package for instance) : /usr/bin/ld: cannot find -lreadline collect2: ld returned 1 exit status make: *** [multiv.so] Erreur 1 ERROR: compilation failed for package 'multiv' The readline library is under /lib on my system and I

Dear R-help list members i would like to use R to produce clustering or partitioning of a dataset. I am trying to use the functions: - hierclust() of the package multiv -pam(), agnes() and fanny() of the package cluster But I cannot get any result because of lack of memory. Would you know any clustering function not to greedy in memory? I have tried to expand my memory limit with memory.limit()

Hello all, I am somewhat new to S-plus and would really appreciate any help you might have on the following problem: I installed S-plus (0.65.1) on a Sun box (Solaris) and it runs fine as far as I can tell. I also installed the cluster and multiv contributed packages. The problem I have is that I get a core dump everytime I try to run a function in the contributed packages. This seems

What happened to multiv package? I have installed R 2.0.0 in my Mac and I could not find this package. I see other things have been reorganized. I have read "What's New" and I have used the search facility in the RHelp panel to no avail. Oscar A. Moreno oscar.moreno at att.net

> Hello, > > I want to install the package "multiv" which is not maintained any > more (found in the archive: multiv_1.1-6.tar.gz from 16 July 2003). I > have installed an older version of R 1.4.1 on my Windows Vista in > order to match the older package. > > As no binary is distributed, is it necessary to compile the package? > If so, how? > >

my major is bioinformatics, and i'm trying to cluster ( agglomerate the closest pari of observations ) in R. i have already got my own similarities metric, but do not know how to clust it based on similarities instead of dissimilarities. since the help document of hierclust mentions the parameter "sim", which seems good to me, but it doesn't appear in the code of hierclust()

Hi, all. I'm trying to cluster 12,500 objects using hclust from package mva. The distance matrix takes up nearly 600 MB. The distance matrix also needs to be copied when being passed to the fortran routine that actually does the clustering (it's modified during the clustering), so that's 1200 MB. I'm actually on a machine with 2.5 GB of memory (and nothing else running), so I

Dear members of R-mailing list, I am using Sammon's Non-Linear Mapping in R as implemented in MASS package. I have two distance matrices (attached with the mail). For the first (/5HT_MACCS_dist.dat/) /sammon()/ works fine but for the second (/5HT_TGT_dist.dat/), I get an error message "configuration has duplicates". I checked both the matrices for duplicate values using/

I sent a query to R-Help about the availability of nonmetric multidimensional scaling (MDS) algorithms in R. I would like to thank Tony Rossini, Jonathan Baron, Sundar Dorai-Raj, and Brian Ripley for helpful replies. The gist of the replies is that isoMDS in the MASS library provides Kruskal's method for nonmetric MDS, sammon in the MASS library provides Sammon's nonlinear mapping method

Hi all, I'm running a multidimensional scaling model on data that are first transformed into a similarity matrix using the program daisy in the cluster package. If I already provide the similarity matrix, the plotting routine will give me the variable names on the plot itself. But, it seems that when I use the daisy program to create the similarity matrix, I can't get the program

I'm not sure this list is the right place for this thing. I noticed some erratic behaviour in sammon(). Running sammon on two nearly identical sets of data results in very different results. Below is an example. I create an initial configuration with cmdscale() and store it into 'vec1'. I write this to file, and read it back in again to 'vec2'. According to cor() on the three

R-helpers, Beginner in R language, I have a problem to install a package (multiv) in R for Windows 98 (R-Gui) First I have got the multiv.zip file from the CRAN precompiled contributed packages for Windows and put this file in C:/Program Files/rw1022. in R-Gui I tried to install it as following > install.packages("C:/Program Files/rw1022/multiv.zip") I received the following

Thanks for the attention paid to my rpoblem. Please find enclosed the matrix with my dissimilarities. This is the only case in which sammon(), from the MASS package, gives me this kind of problems. Domenico > > > -----Messaggio originale----- > > Da: Jari Oksanen [mailto:jarioksa at sun3.oulu.fi] > > Inviato: mercoled?? 20 aprile 2005 11.53 > > A: Domenico Cozzetto >