similar to: config.site settings for M3 Mac typo in manual?

Hi list, I tried to install MCMCpack to R-2.12.0, got the following error, CC -m64 -library=stlport4 -I/apps/sparcv9/R-2.12.0/lib/R/include -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DHAVE_TRUNC -DHAVE_IEEEFP_H -I/opt/csw/include -KPIC -g -c MCMCSVDreg.cc -o MCMCSVDreg.o "error.h", line 598: Error: The function "abort" must have a prototype.

Hi, I have been able to build R-2.9.2 on AIX 6.1 and AIX 5.2. However, I failed to build R-2.10.0 and later releases on these AIX platforms. The error messages I got are attached below: "connections.c", line 461.10: 1506-022 (S) "truncate64" is not a member of "struct Rconn". "connections.c", line 772.10: 1506-022 (S) "truncate64" is not a member

I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being

Hi, I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10. I am using Sun Studio 12. I get the following error: cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library

Dear Developers, motivated by the new Sun Studio checks I compiled R-devel and several of our packages with Sun Studio 12 on Fedora x64. Everything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd

Hello, I experienced a compiler error when I tried to compile the latest version of R i.e. R4.0.2 making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c grep.c(74): catastrophic error: cannot open source file "pcre2.h" # include<pcre2.h> (The pcre2.h header file is actually present!) I used the

I'm trying to get the this Fortran array bounds check to run on my code as my package has been rejected for failing this test. I read writing R extensions and it appears to run this test I should use a Makevars file with one of the following two flags depending on my compiler: FCFLAGS = -g -O2 -mtune=native -fbounds-check FFLAGS = -g -O2 -mtune=native -fbounds-check and store it in the src

Hello, I compiled R-2.15.2 with linux intel compilers (see below). when I execute some R code on a // 4 proc x 4 cores // server (export MKL_NUM_THREADS = 16) very often I have the situations where only one processor (4 cores) is active instead of 4 (16 cores) ! do you know this fact depends on what ? thank you ! P.S. many functions of R are single-threaded, is there a simple way to make them

Hello, the "R Installation and Administration" handbook states in Section C 5.1: For ?amd64? the builds have failed to complete in several different ways, currently with relocation errors for libRblas.so. To fix it: add '-shared' to the SHLIB_LDFLAGS, SHLIB_CXXLDFLAGS and SHLIB_FCLDFLAGS before starting configure. So the complete set of variables' values sufficient to

Hi, After building R 2.14.1 on a Linux system (SUSE Linux Enterprise Server 11 (x86_64) ), I ran "make check" but it halted with the foll error: Testing examples for package ?base? Error: testing 'base' failed Execution halted I looked in <build dir>/test/Examples/base-Ex.Rout.fail and found the foll: *******EXCERPT ***** ... > ### ------- Pickyness Flags :

Dear all, As of the current R alpha release, I'm seeing timezone-related warnings on installing any package (including the recommended ones), which I haven't seen before. For example, [~/Documents/Source/R-alpha]$ bin/R CMD INSTALL ~/git/tractor/lib/reportr * installing to library '/Users/jon/Documents/Source/R-alpha/library' * installing *source* package 'reportr' ...

Dear R user, I try to build R-2.8.1 on SunOS 5.9, and use following command: CC="cc -xarch=v9" CFLAGS="-xO5 -xlibmil -dalign" F77="f95 -xarch=v9" FFLAGS="-xO5 -xlibmil -dalign" CXX="CC -xarch=v9" CXXFLAGS="-xO5 -xlibmil -dalign" FC="f95 -xarch=v9" FCFLAGS="-xO5 -xlibmil

Full_Name: Lukasz Andrzej Bartnik Version: 2.8.1 OS: RHELS 5.2 Submission from: (NULL) (194.181.94.250) Compile R for 32 bit on a 64 bit machine: unset LD_LIBRARY_PATH unset R_LD_LIBRARY_PATH export CC="gcc -m32" export CXXFLAGS="-m32 -O2 -g" export FFLAGS="-m32 -O2 -g" export FCFLAGS="-m32 -O2 -g" export OBJCFLAGS="-m32 -O2 -g" export LIBnn=lib

* Furthermore, use NDEBUG globally to detect the presence of building with more debug output information. AX_CHECK_ENABLE_DEBUG is easier to use, and nowadays Gnome has also switched to it from its own custom solution. --- configure.ac | 19 +------ include/FLAC/assert.h | 2 +- m4/ax_check_enable_debug.m4 | 124 ++++++++++++++++++++++++++++++++++++++++++

Full_Name: Mike Pacey Version: 2.6.0 OS: SuSe Linux 9.3 x86_64 Submission from: (NULL) (194.80.32.10) A "vanilla" version of R configures and compiles without a problem on my system. Switching to using the PGI compiler configures correctly (see the values at the bottom fo thismessage), but compilation aborts with: pgcc -I../../src/extra/zlib -I../../src/extra/bzip2

Dear list, I'm following the instructions provided here to compile R 64 bit on AIX 6.1. I did export OBJECT_MODE=64 export CC="gcc -maix64 -pthread" export CXX="g++ -maix64 -pthread" export FC="gfortran -maix64 -pthread" export F77="gfortran -maix64 -pthread" export CFLAGS="-O2 -g -mcpu=power6" export FFLAGS="-O2 -g -mcpu=power6"

Using AIX 5.3 and gcc-4.2.1 for building R-2.7.1 with the following configure flags OBJECT_MODE=64 CC="gcc -maix64" CXX="g++ -maix64" F77="gfortran -maix64" FC="gfortran -maix64" CFLAGS="-g -O3" CXXFLAGS="-g -O3" FFLAGS="-g -O3" FCFLAGS="-g -O3" LDFLAGS="-L/$HOME/usr/local/lib/ppc64

* Furthermore, use NDEBUG globally to detect the presence of building with more debug output information. AX_CHECK_ENABLE_DEBUG is easier to use, and nowadays Gnome has also switched to it from its own custom solution. --- configure.ac | 52 ++++++++++++------ include/FLAC/assert.h | 2 +- m4/ax_check_enable_debug.m4 | 124

Hi, i'm trying to compile R on a Cray XT3 using pgi/7.2.1 - CNL (compute node linux) The R version is 2.8.0 this is the option -enable-R-static-lib=yes --disable-R-shlib CPICFLAGS=fpic FPICFLAGS=fpic CXXPICFLAGS=fpic SHLIB_LDFLAGS=shared --with-x=no SHLIB_CXXLDFLAGS=shared --disable-BLAS-shlib CFLAGS="-g -O2 -Kieee" FFLAGS="-g -O2 -Kieee" CXXFLAGS="-g -O2

I am having trouble compiling R-2.6.2 on suse linux x86_64 using the intel compiler. I read section C.2.1 Intel compilers in the R Installation and Administration manual, and put CC=icc CFLAGS="-g -O3 -wd188 -ip" F77=ifort FFLAGS="-g -O3" ICC_LIBS=/opt/intel/cce/10.1.012/lib IFC_LIBS=/opt/intel/fce/10.1.012/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/lib64"