similar to: regarding CCA plot

Hi: I do not know why the function decostand is not found in my vegan library, I have downloaded the package recently, and it seems to work well..Do you have any suggestion? Rosa. [[alternative HTML version deleted]]

Dear R-users, I am a new user for R. I am eager to lean about it. I wanted to read and summary of the a simple data file I used the following, rel <- read.table("C:/Documents and Settings/ashta/My Documents/R_data/rel.dat", quote="",header=FALSE,sep="",col.names= c("id","orel","nrel")) summary(rel) Below is the

Hi, Does anyone know of a function in R that can handle a fractional variable as the dependent variable? The catch is that the function has to be inclusive of 0 and 1, which betareg() does not. It seems like GLM might be able to handle the fractional logit model, but I can't figure it out. How do you format GLM to do so? Best, Rachael [[alternative HTML version deleted]]

* Rahul Chaudhry via gnu-gabi: > The encoding used is a simple combination of delta-encoding and a > bitmap of offsets. The section consists of 64-bit entries: higher > 8-bits contain delta since last offset, and lower 56-bits contain a > bitmap for which words to apply the relocation to. This is best > described by showing the code for decoding the section: > > typedef

Hi, I hope someone knows the answer to this or has a real good reference about it (I am using Legendre & Legendre, Numerical Ecology, 1998).... My data is a data.frame with locations as rows and vegetation assemblages / species as columns. I've done a PCA, a correspondance analysis (CA) using ca in ca package and a detrended correspondance analysis (DCA) using decorana from vegan package.

Dear colleages in R, I have earlier been working with R in Linux, where reading in a table containing Scandinavian letters ("?", "?", and "?") in the header as part of variable names has not caused any problem whatsoever. However, when trying to do the same in R running on new MacOS-X (with an Intel processor) with the same original text table does not seem to

+llvm-dev Discussion here: https://sourceware.org/ml/gnu-gabi/2017-q2/msg00000.html On Tue, May 2, 2017 at 10:17 AM, Suprateeka R Hegde <hegdesmailbox at gmail.com> wrote: > On 02-May-2017 12:05 AM, Florian Weimer wrote: >> On 05/01/2017 08:28 PM, Suprateeka R Hegde wrote: >>> So the ratio shows ~96% is RELATIVE reloc. And only ~4% others. This is >>> not the

Hello, I am relatively new to R and I am working through the code that is provided in the book Numerical Ecology with R and I have run across an error message that I can't seem to figure out. I am using the vegan, ade4, gclus and cluster packages. The code is as follows: # Ordered community table # Species are ordered by their weighted averages on site scores or <- vegemite(spe,

Sri and I have been working on this over the past few months, and we've made some good progress that we'd like to share and get feedback on. Our work is based on the 'experimental-relr' prototype from Cary that is available at 'users/ccoutant/experimental-relr' branch in the binutils repository [1], and was described earlier in this thread:

Dear all, I was looking for methods in R that allow assessing the number of significant principal coordinates. Unfortunatly I was not very successful. I expanded my search to the web and Current Contents, however, the information I found is very limited. Therefore, I tried to write code for doing a randomization. I would highly appriciate if somebody could comment on the following approach.

Hello, I am making a boxplot of 13 boxes. I tried to color the box using 13 colors but failed. Only red and brown were displayed. Green, blue, and grey disappeared. Please kindly advise modification after checking the code below. Thank you in advance. Elaine R code # data input dataN <-read.csv("H:/a_mig_distance_B_NB/R_data/Mig_bird_586_20120925.csv",header=T, row.names=1)

Hi every body: I need some help with kendall.global. The example in the manual seems not working well, and cannot used with my data, always the same error. data(mite) > mite.hel <- decostand(mite, "hel") > > # Reproduce the results shown in Table 2 of Legendre (2005), a single group > mite.small <- mite.hel[c(4,9,14,22,31,34,45,53,61,69),c(13:15,23)] >

A simple combination of delta-encoding and run_length-encoding is one of the first schemes we experimented with (32-bit entries with 24-bit 'delta' and an 8-bit 'count'). This gave really good results, but as Sri mentions, we observed several cases where the relative relocations were not on consecutive offsets. There were common cases where the relocations applied to alternate

Hello I ran the code below but it said: no object "'panel.xyplot.intermediate.hh'" Please kindly advise how to modify the code. thank you. (It works with panel.bwplot.intermediate.hh) Elaine code library(HH) # data input dataN <-read.csv("H:/R_data/Mig_bird_586.csv",header=T, row.names=1) dim(dataN) dataN[1,] str(dataN) diet.code <-

The function "substitute" seems to fail to make a genuine substitution, although the printed verision seems fine. Here is an example. > m <- substitute(Y <- function(x) FUN(x+1), + list(Y = as.name("y"), FUN = as.name("sin"))) > m y <- function(x) sin(x + 1) > eval(m) > y function(x) FUN(x+1) However the story doesn't end there. The

<font size="2">I''m working on a large Rails site and we want to move from RSpec 0.8.2 to the latest and greatest.&nbsp; So we ran the translator and yet we''re having a lot of trouble translating should_render.<br><br>I found this on the web:<br><br>We will NOT be supporting the following in the new syntax:<br>&nbsp;

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

Hi, I would like to calculate the RELATIVE euclidean distance. Is there a function in R which does it ? (I calculated the abundance of 94 chemical compounds in secretion of several individuals, and I would like to have the chemical distance between 2 individuals as expressed by the relative euclidean distance. Some compounds are in very low abundance whereas others are in high abundance,

Dear list, This is related to the change discussed in the thread "no visible binding for global variables for data sets in a package". I went to look at the Check results for one of my packages (analogue) on CRAN: http://cran.r-project.org/web/checks/check_results_analogue.html Under the r-devel build machines I'm seeing a lot of things like this: Stratiplot.default :

Hello R users I am having trouble accessing data on a remote server when using sweave. An example is the loading of an .RData file e.g. load(url("http://uk-air.defra.gov.uk/openair/R_data/MH_2006.RData")) which works fine from the command line (this loads a small .RData file into R). I have a sweave document with this sort of code in that is meant to import data from the server and