similar to: Forking and adapting an R package

On 12/07/2016 7:28 AM, timo at timogrossenbacher.ch wrote: > Hello. > > I'm trying to adapt the package ?hexbin? to suit my needs. This is the first > time I do this. I've read a bit through Hadley's ?R packages?, but now I'm > pretty lost (from a workflow point of view). I am using RStudio and Hadley's > devtools. > > So I forked the repo I want to

> Duncan Murdoch <murdoch.duncan at gmail.com> hat am 12. Juli 2016 um 19:38 > geschrieben: > > On 12/07/2016 7:28 AM, timo at timogrossenbacher.ch wrote: > > Hello. > > > > I'm trying to adapt the package ?hexbin? to suit my needs. This is the first > > time I do this. I've read a bit through Hadley's ?R packages?, but now I'm > >

Greetings. The group that I work with has just started using the approach outlined in Karl Broman's handy primer: http://kbroman.org/pkg_primer/pages/vignettes.html to create vignettes for a couple of R packages. This works fine as long as we have a current Rmd version of the vignette. But we have some old PDF documents that we'd like to include as vignettes as well. I'd like

Dear Community, I have an Rmarkdown vignette with optional child documents. Since all markdown files in the vingette folder are build when executing R CMD build I did place the child documents in /inst/ParametrizedReportChid/ so they are excluded from the build. I do reference them from the markdown file in the vignette folder by: ```{r referencingChildDocument} child_docs <-

Greetings: I have multiple hexbin plots with varying greatest densities. Right now, the data on each plot varies from 1-256 levels of density. The problem with that is that in Plot A the data are more scattered across a 2 x 2 grid whereas in Plot B the data are more concentrated in fewer cells. Hence, Plot A has a few very dense grid cells and plot B has nothing as dense as plot A. (In Plot A

So far you haven't provided a reproducible example yet. I wonder what exactly the object `sample_analysis` is. Sounds like it is an environment. If that is the case, devtools::build_vignettes() will tangle (for the meaning of "tangle", see ?tools::buildVignette) your vignette into an invalid R script. Environments cannot be represented via dput(), so knitr's purl() (eventually

On 09/07/2018 3:24 PM, Witold E Wolski wrote: > Dear Yihui, > > Thank you for the valuable questions. > > sample_analysis is a "tibble" while > configuration is an "R6" class. > But I also have parametrized reports where I pass R reference classes > as arguments. > > This is the Rmd yaml params part corresponding to the error message. > >

Thanks, Duncan. The files in question are Emacs Org-mode files, and I think these are more or less isomorphic to Rmd files, but I haven't used Org-mode in a long time, so I think the mapping (Org-mode ==> Rmd) would be painful. -- Mike On Mon, Feb 19, 2018 at 1:20 AM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > On 18/02/2018 9:06 PM, Michael Hannon wrote: >>

Hello, This is a problem I posted about already some time ago: https://stat.ethz.ch/pipermail/r-devel/2018-September/076786.html Finally, I did had some time to create a minimal package to reproduce the problem that vignettes with child can not be build. https://github.com/wolski/RmarkdownVignetteProblem The problem basically is that while all the vignettes can be build by running

On 18/02/2018 9:06 PM, Michael Hannon wrote: > Greetings. The group that I work with has just started using the approach > outlined in Karl Broman's handy primer: > > http://kbroman.org/pkg_primer/pages/vignettes.html > > to create vignettes for a couple of R packages. > > This works fine as long as we have a current Rmd version of the vignette. But > we

> On 19 Feb 2018, at 12:25, Duncan Murdoch <murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote: > > On 19/02/2018 5:47 AM, Michael Hannon wrote: >> Thanks, Duncan. The files in question are Emacs Org-mode files, and I >> think these are more or less isomorphic to Rmd files, but I haven't >> used Org-mode in a long time, so I think

Hi, Would like to use to the hexbin package to plot a 2D hist - because it looks really _cool_. My problem is related to drawing a pdf hexbin graphic in series of other graphics. All other figures have a par(mar=c(3.2,3.2,1,1)). So the gplot.hexbin figure in this series looks a little alienated? Was trying a to specify the _mar_ using par, viewport, hexViewport etc. a little. My question. How

Dear Duncan, Following your advice (Thank you for it) I did include into the vignettes params: configuration: !r get(data(sample_analysis)) data: !r get(data(skylineconfig)) And everything seemed (see below) to work fine. devtools::build_vignettes() builds the vignettes. Runs with NO error. By this the .Rmd file, html file and corresponding .R files is being placed into the inst/doc

Dear all, I am trying to use hexbin and read the very interesting article on grid ( http://www.ci.tuwien.ac.at/Conferences/useR-2004/Keynotes/Murrell.pdf ) and am hoping for some advice from more experienced users of hexbin. I am trying to visualise a data and fit a straight line trough it. For example, here is how I would do it in the usual way # simulate data x <- rnorm(1000) y <-

Hi Mike, Did you read the relevant section of the official "Writing R Extensions" manual? If so, what about the instructions provided there do you find lacking? Best, Ista On Sun, Feb 18, 2018 at 9:06 PM, Michael Hannon <jmhannon.ucdavis at gmail.com> wrote: > Greetings. The group that I work with has just started using the approach > outlined in Karl Broman's handy

Hi all! I'm trying to save an output of the HEXBIN process... is so much data (105k), and I need to export to an ASCII file. I tried to use: write.table() ----> Error in as.data.frame.default(x[[i]], optional = TRUE) : cannot coerce class 'structure("hexbin", package = "hexbin")' into a data.frame cat() ---> Error in cat(list(...), file, sep, fill,

Hi, I am trying to create a plot with pairs() using a gplot.hexbin() for each pair. For pairs I can provide a custom upperPanel function: pairs(iris[1:4], panel=mypanel) and mypanel() calls plot.hexbin(): library(hexbin) # Bioconductor mypanel <- function(x, ...){ hb <- hexbin(x) plot(hb) } The problem is that gplot.hexbin() is based on the

On 19/02/2018 5:47 AM, Michael Hannon wrote: > Thanks, Duncan. The files in question are Emacs Org-mode files, and I > think these are more or less isomorphic to Rmd files, but I haven't > used Org-mode in a long time, so I think the mapping (Org-mode ==> > Rmd) would be painful. If they aren't LaTeX then they won't be able to masquerade as Sweave files, so things are

Dear Duncan, Thanks for chiming in. Could you explain how you set debug() on post_processor()? I've tried adding debug(post_processor) to rsos_article() or adding debug(post_processor) when after post_processor was defined in the debugger. Neither work for me. All supporting files are available within the package. The code below should be reproducible on your machine.

Dear All i am trying to figure out the use of hexbin function in the hexbin package --can any one send me a working example of the same The > example(hexbin) ---option is of not much use Thanks Kind regards Ravi [[alternative HTML version deleted]]