similar to: Something is wrong with the unserialize function

Displaying 20 results from an estimated 1000 matches similar to: "Something is wrong with the unserialize function"

2020 Oct 29
2
[External] Something is wrong with the unserialize function
This Index: src/main/altrep.c =================================================================== --- src/main/altrep.c (revision 79385) +++ src/main/altrep.c (working copy) @@ -275,10 +275,11 @@ SEXP psym = ALTREP_SERIALIZED_CLASS_PKGSYM(info); SEXP class = LookupClass(csym, psym); if (class == NULL) { - SEXP pname = ScalarString(PRINTNAME(psym)); + SEXP pname =
2020 Oct 29
0
[External] Something is wrong with the unserialize function
I found that also; fixed in r79386 in the trunk. Will port to R-patched shortly. Best, luke On Thu, 29 Oct 2020, Martin Morgan wrote: > This > > Index: src/main/altrep.c > =================================================================== > --- src/main/altrep.c (revision 79385) > +++ src/main/altrep.c (working copy) > @@ -275,10 +275,11 @@ > SEXP psym =
2020 Oct 29
0
[External] Something is wrong with the unserialize function
Thanks for the report. Will look into it when I get a chance unless someone else gets there first. A simpler reprex: ## create and serialize a memmory-mapped file object filePath <- "x.dat" con <- file(filePath, "wrb") writeBin(rep(0.0,10),con) close(con) library(simplemmap) x <- mmap(filePath, "double") saveRDS(x, file = "x.Rds") ## in a
2011 Dec 06
1
unserialize and eager execution
Hi, While debugging a network server I'm developing I noticed something unusual - call to unserialize() resulted in an error about loading a namespace. I was a bit taken back by this - why should unserializing an object cause a namespace lookup? Are there any other side-effects of unserialize() that I should be cautious about? I've been digging through the R_Unserialize() call, I
2018 Jun 21
1
DOCUMENTATION(?): parallel::mcparallel() gives various types of "Error in unserialize(r) : ..." errors if value is of type raw
I stumbled upon the following: f <- parallel::mcparallel(raw(0L)) parallel::mccollect(f) # $`77083` # NULL but f <- parallel::mcparallel(raw(1L)) parallel::mccollect(f) # Error in unserialize(r) : read error traceback() # 2: unserialize(r) # 1: parallel::mccollect(f) (restarting because the above appears to corrupt the R session) f <- parallel::mcparallel(raw(2L))
2020 Oct 07
2
Coercion function does not work for the ALTREP object
Hi all, The coercion function defined for the ALTREP object will not be called by R when an assignment operation implicitly introduces coercion for a large ALTREP object. For example, If I create a vector of length 10, the ALTREP coercion function seems to work fine. ``` > x <- 1:10 > y <- wrap_altrep(x) > .Internal(inspect(y)) @0x000000001f9271c0 13 INTSXP g0c0 [REF(2)] I am
2011 Sep 28
1
serialize/unserialize vector improvement
Hi folks, I've attached a patch to the svn trunk that improves the performance of the serialize/unserialize interface for vector types. The current implementation: a) invokes the R_XDREncode operation for each element of the vector type, and b) uses a switch statement to determine the stream type for each element of the vector type. I've added R_XDREncodeVector/R_XDRDecodeVector functions
2019 Jul 23
3
Any plans for ALTREP lists (VECSXP)?
Hi Kylie, Is it a list with only numerics in it? (I only see REALSXPs there, but obviously inspect isn't showing all of them). If so, you could load it up into one big vector and then also keep partitioning information around. Bioconductor does this (see ?IRanges::CompressedList ). The potential benefit here being that the underlying large vector could then be a big out-of-memory altrep. How
2019 Jul 24
1
[External] Re: Any plans for ALTREP lists (VECSXP)?
I can work on this. Thanks Luke. ~G On Wed, Jul 24, 2019 at 8:25 AM Tierney, Luke <luke-tierney at uiowa.edu> wrote: > If one of you wanted to try to create a patch to support ALTREP > generic vectors here are some notes: > > The main challenge I am aware of (there might be others): Allowing > DATAPTR to return a writable pointer would be too dangerous because > the GC
2005 Dec 12
2
Can you unserialize an object from the db?
I don''t even know if this is possible. I want to use an object as an attribute for one of my classes. I can save it to the db fine, looks like...but I need to be able to use it after I pull the object from the db. Right now the attribute is just a String, but I need it to be a Runt::Intersect object. Does anyone know how I can unserialize the attribute so I can use it as an object?
2020 Oct 08
1
Coercion function does not work for the ALTREP object
Hi Gabriel, here is a simple package for reproducing the problem. https://github.com/Jiefei-Wang/testPkg Best, Jiefei On Thu, Oct 8, 2020 at 5:04 AM Gabriel Becker <gabembecker at gmail.com> wrote: > Jiefei, > > Where does the code for your altrep class live? > > Thanks, > ~G > > On Wed, Oct 7, 2020 at 4:25 AM Jiefei Wang <szwjf08 at gmail.com> wrote: >
2018 Nov 07
2
error unserializing ascii format (v2 or v3)
I ran into an interesting error unserializing a file created with ascii=TRUE: R 3.5.1 (Windows or Linux): > unserialize(serialize(list(raw=as.raw(c(39,41))), NULL, version=2, ascii=TRUE)) Error in unserialize(serialize(list(raw = as.raw(c(39, 41))), NULL, version = 2, : ReadItem: unknown type 29, perhaps written by later version of R The same error happens when the
2008 Jul 31
2
C versions of serialize/unserialize in packages
Are the functions 'R_Unserialize' and 'R_InitFileInPStream' allowed to be used in R packages? I guess I'm just not clear on the implications of this comment in 'Rinternals.h': /* The connection interface is not yet available to packages. To allow limited use of connection pointers this defines the opaque pointer type. */ I have a function in the
2020 Jul 22
3
Invisible names problem
I ran into strange behavior when removing names. Two ways of removing names: i <- rep(1:4, length.out=20000) k <- c(a=1, b=2, c=3, d=4) x1 <- unname(k[i]) x2 <- k[i] x2 <- unname(x2) Are they identical? identical(x1,x2) # TRUE but no identical(serialize(x1,NULL),serialize(x2,NULL)) # FALSE But problem is with serialization type 3, cause:
2007 Dec 05
3
sytanx question
in a template file login.rhtml: <%= form.password_field :password, :size => 40 %> and i get this error: undefined method `password'' for #<User:0x47e5bcc what is this supposed to mean? and somebody please explain this syntax: Method :password should not it be: Method :password=value? --~--~---------~--~----~------------~-------~--~----~ You received this message because
2012 Aug 31
3
Arrays Partial unserialization
Hi all, I'm working with some huge array in R and I need to load several ones to apply some functions that requires to have all my arrays values for each cell... To make it possible, I would like to load only a part (for example 100 cells) of all my arrays, apply my function, delete all cells loaded, loaded following cells and so on. Is it possible to unserialize (or load) only a
2011 Oct 15
2
gctorture() and gzfile() doesn't get along.
Found the simpliest way of seeing I bug I encountered doing "R CMD check --use-gct": Just launch R (with --vanilla), and do this: > ?gctorture # this work > gctorture() > ?gctorture Error in gzfile(file, "rb") : can only weakly reference/finalize reference objects # this does not It seems that when gctorture() is on gzfile() doesn't work.
2019 May 16
3
ALTREP: Bug reports
Hello, I have encountered two bugs when using ALTREP APIs. 1. STDVEC_DATAPTR >From RInternal.h file it has a comment: /* ALTREP support */ > void *(STDVEC_DATAPTR)(SEXP x); However, this comment might not be true, the easiest way to verify it is to define a C++ function: void C_testFunc(SEXP a) > { > STDVEC_DATAPTR(a); > } and call it in R via > a=1:10 > >
2019 May 16
3
ALTREP: Bug reports
Hello Luke and Gabriel, Thank you very much for your quick responses. The explanation of STDVEC is very helpful and I appreciate it! For the wrapper, I have a few new questions. 1. Like Luke said a mutable object is not possible. However, I noticed that there is one extra argument *deep* in the function duplicate. I've googled all the available documentation for ALTREP but I did not find
2013 Jul 15
2
Serialize data.frame to database
Dear R-Users, I need a very fast and reliable database solution so I try to serialize a data.frame (to binary data) and to store this data to an SQLite database. This is what I tried to do: library(RSQLite) con <- dbDriver("SQLite") db <- dbConnect(con, "test") dbSendQuery(db, 'CREATE TABLE frames("simID" INT, "data" BLOB)') data.bin <-