similar to: abort

Displaying 20 results from an estimated 4000 matches similar to: "abort"

2018 May 10
2
readLines() behaves differently for gzfile connection
When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In
2018 May 10
1
readLines() behaves differently for gzfile connection
You bet - it's available on github at https://github.com/UW-GAC/wgsaparsr/blob/master/tests/testthat/1k_annotation.gz -Ben On Thu, May 10, 2018 at 4:17 PM, Michael Lawrence <lawrence.michael at gene.com > wrote: > Would it be possible to get that file or a representative subset of it > somewhere so that I can reproduce this? > > Thanks, > Michael > > On Thu, May
2018 Feb 20
5
deparseDots to get names of all arguments?
Hi, All: ????? How can I get the names of all the arguments in dots(...)? ????? I'm able to get the name of the first argument but not the second: deparseDots <- function(...){ ? deparse(substitute(...)) } a <- 1 b <- 2 deparseDots(a, b) [1] "a" ????? I'd like to get c('a', 'b'). ????? Thanks, ????? Spencer Graves > sessionInfo() R
2018 Feb 21
0
deparseDots to get names of all arguments?
Does substitute(...()) do what you want? > myFunc <- function(x, ...) substitute(...()) > myFunc(y=1/(1:10), x=sin(3:1), z=stop("Oops"), "untagged arg") $y 1/(1:10) $z stop("Oops") [[3]] [1] "untagged arg" > names(.Last.value) [1] "y" "z" "" Bill Dunlap TIBCO Software wdunlap tibco.com On Tue, Feb 20, 2018 at
2017 Aug 29
1
Print all In new window R 3.4.1 post-installation problems in Mac OSX 10.12.6
Hi, I installed R 3.4.1 on Mac OSX 10.12.6 version. On opening Preferences and trying to change the editor font by clicking the select button I get following error message in R. 2017-08-28 11:57:41.551 R[809:11355] *** RController: caught ObjC exception while processing system events. Update to the latest GUI version and consider reporting this properly (see FAQ) if it persists and is not
2018 May 10
0
readLines() behaves differently for gzfile connection
Would it be possible to get that file or a representative subset of it somewhere so that I can reproduce this? Thanks, Michael On Thu, May 10, 2018 at 3:31 PM, Ben Heavner <bheavner at gmail.com> wrote: > When I read a .gz file with readLines() in 3.4.3, it returns text (and a > warning). In 3.5.0, it gives a warning, but no text. Is this expected > behavior or a bug? > >
2018 Feb 02
2
Updating Rcpp package when it is claimed by dplyr
When i tried to install the hunspell package, I got this error message: Error: package ?Rcpp? 0.12.3 was found, but >= 0.12.12 is required by ?hunspell? So I set about installing a new version of Rcpp but I get this message: Error in unloadNamespace(pkg_name) : namespace ?Rcpp? is imported by ?dplyr? so cannot be unloaded How does one get around that? I tried installing Rcpp in a
2015 Aug 10
2
Bug or expected behavior of APFloat class?
Hi, I've been playing around with the APFloat class lately and I came across behavior I was not expecting based on reading the implementation comments and I'm wondering if it's a bug or intentional. The behavior concerns converting an APFloat to a string and back again. In the implementation of ``APFloat::toString(...)`` you can specify ``FormatPrecision`` as 0. The method comments
2018 Sep 19
5
segfault issue with parallel::mclapply and download.file() on Mac OS X
I have an lapply function call that I want to parallelize. Below is a very simplified version of the code: url_base <- "https://cloud.r-project.org/src/contrib/" files <- c("A3_1.0.0.tar.gz", "ABC.RAP_0.9.0.tar.gz") res <- parallel::mclapply(files, function(s) download.file(paste0(url_base, s), s)) Instead of download a couple of files in parallel, I get a
2017 Sep 08
1
Bug: dput/deparse with named character vector inside list
Hi, I noticed some R-devel failures on CRAN on a package I maintain: https://cloud.r-project.org/web/checks/check_results_httptest.html It appears that 'dput'/'deparse' is returning an invalid object when there is a named character vector inside a list. Here is a minimal example that reproduces the issue: > z <- list(a=c(b="foo")) > str(z) List of 1 $ a: Named
2016 Jun 01
2
segfault / crash when asking for large memory via strrep()
We've had this more general topic on R-help, and also in R-devel recently. There's one case here where I get the feeling R never gets into swapping but more directly aborts possibly from a bug we can more easily fix. Today I've been working (successfully! - not yet committed) at fixing str() for very large strings. In this process, I've found that pc <- function(.)
2017 Jul 24
2
Loading Rcmdr
With the lastest version of R 3.4.1 I have not been able to loard Rcmdr. Advice please. Thank you, Jack Talley, PhD [[alternative HTML version deleted]]
2018 Oct 25
1
small bug in formatC?
formatC(0.0001, digits = 3, format = "f", zero.print="< 0.01") Error in strrep(" ", nc - i1) : invalid 'times' value The problem, if it is one, is in .format.zeros: .format.zeros("0.000", "xxxxxx") Error in strrep(" ", nc - i1) : invalid 'times' value R version 3.5.1. David [[alternative HTML version deleted]]
2018 Feb 02
0
Updating Rcpp package when it is claimed by dplyr
Your last statement is extremely unlikely to be true. The dplyr package should not be present in a vanilla environment, so there should be no such conflict. -- Sent from my phone. Please excuse my brevity. On February 1, 2018 11:00:01 PM PST, Patrick Connolly <p_connolly at slingshot.co.nz> wrote: >When i tried to install the hunspell package, I got this error >message: >
2018 Feb 02
2
Updating Rcpp package when it is claimed by dplyr
Or, to avoid accusing you of lying. what you think is "vanilla" probably isn't. What exactly did you do? On Unix-likes, I would do something like this echo 'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")' | R --vanilla (or maybe https://cloud.r-project.org is better...) -pd > On 2 Feb 2018, at 08:15 , Jeff Newmiller
2018 Feb 02
0
Updating Rcpp package when it is claimed by dplyr
On Fri, 02-Feb-2018 at 10:25AM +0100, peter dalgaard wrote: |> Or, to avoid accusing you of lying. what you think is "vanilla" |> probably isn't. What exactly did you do? On Unix-likes, I would do |> something like this |> echo 'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")' | R --vanilla |> |> (or maybe
2018 Aug 31
2
svg ignores cex.axis in R3.5.1 on macOS
????? Plots produced using svg in R 3.5.1 under macOS 10.13.6 ignores cex.axis=2.? Consider the following: > plot(1:2, cex.axis=2) > svg('svg_ignores_cex.axis.svg') > plot(1:2, cex.axis=2) > dev.off() > sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.6 Matrix products: default BLAS:
2018 Sep 05
2
svg ignores cex.axis in R3.5.1 on macOS
Seems ok on my system. Axis label size changes when cex.axis does. ## tested in the middle of another long session, so many additional packages are attached, including some personal packages not available elsewhere > sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.6 Matrix products: default BLAS:
2019 Apr 20
2
update.package() asking even when asked to not ask
Hi, I was trying to update packages today on one of our MacOS servers, and got this: ? > update.packages(ask=FALSE) ? ? There is a binary version available but the source version is later: ?? ???? binary source needs_compilation ? gsl 1.9-10.3? 2.1-6????????????? TRUE ? Do you want to install from sources the package which needs compilation? (Yes/no/cancel) So it looks like
2009 Jan 07
1
Compiling R for Solaris 10 Intel
Hi, I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install) I found that it compiled and went through the tests fine. The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?