similar to: can't build from source: error: template with C linkage

This looks like the result of including a C++ system header inside an extern "C" block. There is no evidence of this happening in the current version 2.22.1. However, it did happen in the previous version 2.22 via the chain of inclusions: MCMCglmmcc.h -> cs.h -> R.h -> various C++ system headers See Writing R Extensions P 108. I would check that the people reporting this bug

Hi, <This issue was previously posted in R-help, but advised to post here as a more relevant group> I was trying to install RQuantLib in my Ubuntu machine which failed with below information : *> install.packages('RQuantLib', repos='http://cran.rstudio.com/ <http://cran.rstudio.com/>', INSTALL_opts = c('--no-lock'))* *Installing package into

On 12 November 2016 at 07:59, Dirk Eddelbuettel wrote: | | On 12 November 2016 at 14:23, Kirill M?ller wrote: | | Thanks. I have now CXX = g++ -std=c++98 in my /etc/R/Makeconf, it's | | picked up properly. I can only assume that the last -std= option wins if | | more than one are given on the same command line [1]. | | Good to know it works. | | I am still a little puzzled why it was

Did you istall the tcl- and tk-devel packages? Best, Albrecht -- Albrecht Kauffmann alkauffm at fastmail.fm Am Sa, 18. Nov 2017, um 05:00, schrieb Erin Hodgess: > When I have compiled from sourced on Ubuntu, I did NOT include the > "with-tcltk" and it worked fine. Did you try that, please? > > Thanks, > Erin > > > On Fri, Nov 17, 2017 at 6:34 PM, Rolf

Hi Francois, Thanks for your quick response. Actually, I had already done that... sudo apt-get install libpoppler-cpp-dev Reading package lists... Done Building dependency tree Reading state information... Done libpoppler-cpp-dev is already the newest version (0.41.0-0ubuntu1.1). 0 upgraded, 0 newly installed, 0 to remove and 107 not upgraded. Therefore, I assume I have this installed. Best

Does anybody know why two "-g" flags appear in the call to gcc in R CMD SHLIB Example: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic *-g* -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 *-g* -c c_file1.c -o c_object1.o Surely it need only be listed once? Alan [[alternative HTML version deleted]]

After upgrading to Ubuntu 16.10, which brings GCC 6, I've noticed that packages are compiled in C++14 mode by default. Here's what a g++ command for compiling one of Rcpp's modules look like on my system: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c

I'm running Ubuntu 17.04 and R 3.4.1. I installed the latter yesterday, so I presume it's the latest version. I want to install Tidyverse, which I've spent many happy hours with under Windows. But when I do install.packages("tidyverse") , I get errors about unrecognized command line options to gcc. These start when the install hits the colorspace and munsell packages.

Dear All, I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same

On Wed, Apr 5, 2017 at 2:24 PM, Robert McGehee <rmcgehee at walleyetrading.net> wrote: > Winston, > I had a similar experience to you tracking down an insanely difficult bug > in my R code that "disappeared" whenever slight changes were made to the > script (e.g. like adding cat() statements). In my case, it coincided with > my over-eager compilation of R and its

Hello everybody, First a big thanks for tinc-vpn I am still using it next to wireguard and openvpn. I am having a setup where the tinc debian appliance is at 100% cpu load doing about 7.5MB/s. Compression = 9 PMTU = 1400 PMTUDiscovery = yes Cipher = aes-128-cbc How can I pick a cipher that is the fasted for my CPU and don't create a CPU bottleneck at 100%. Kind regards, Jelle de Jong

> > After using 'python sdist', can't you use the tarball (in python/dist) > > in order to create a venv directly? > > I think I will be able to install the python library in the venv using > the tarball. However, won't my liguestfs application require some of > the binaries installed as part of 'make install' for running? I am > trying to not

Dear R-SIG-Debians, I have difficulties installing packages from within R through install.packages(). R version is 3.2.0 and OS is Linux Mint 17.1. For most packages, a lot of error messages come up which seem to be related to compilation. Installing packages provided by the ubuntu distro through apt-get works just fine. I followed all directions given in CRAN's

Hi, After loading R 4.0.0 on Ubuntu 20.04. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()'

Hi, On the OpenMandriva side, x86_64 passes all checks. We're having some problems with other architectures though (see below): x86_64 succeeded, packages are here: https://abf.openmandriva.org/build_lists/76792 i586 fails to build, but this seems to be an issue with 3.8.1 (which we're using to build 3.9): /usr/bin/clang++ -D_GNU_SOURCE -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS

Jarrod, On 19 August 2016 at 04:43, Jarrod Hadfield wrote: | Hi All, | | Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers | | gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 | g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 | Mac OS X El Capitan (version/compiler unspecified) | | The issue seems to be with mixing

Hi, What is the difference between the R installation from source and the R installation from ubuntu repositories. Specifically when I install R-3.1.1 on ubuntu 14.04 from sources ldflags and CXXFLAGS are different that those from the installation from a repo. Installation from sources: R CMD config --ldflags -Wl,--export-dynamic -fopenmp -L/home/prana/prana_R/third-party/install/lib/R/lib

On 28.03.2018 22:14, Odhiambo Washington wrote: > > > On 27 March 2018 at 20:06, <aki.tuomi at dovecot.fi > <mailto:aki.tuomi at dovecot.fi>> wrote: > > Hi! > > We are releasing v2.3.1, which mostly consists of bug fixes for > 2.3.0, and few improvements. This is also available via > https://repo.dovecot.org if you want packages. libsodium

Dear testers, 3.9.0-rc1 was just tagged from the 3.9 branch at r277207. This took a little longer than I'd hoped, but I think the branch is in a decent state now. There are still open merge requests and bugs, but I'd like to get the real testing started to see where we're at. Please build, test, and upload binaries to the sftp. Let me know how it goes. I'll upload source, docs,

On 29.03.2018 10:36, Odhiambo Washington wrote: > > > On 29 March 2018 at 09:43, Aki Tuomi <aki.tuomi at dovecot.fi > <mailto:aki.tuomi at dovecot.fi>> wrote: > > > > On 28.03.2018 22:14, Odhiambo Washington wrote: >> >> >> On 27 March 2018 at 20:06, <aki.tuomi at dovecot.fi >> <mailto:aki.tuomi at dovecot.fi>>