Displaying 20 results from an estimated 2000 matches similar to: "segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages"
2015 Sep 21
2
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
Here's an update:
I checked the ChangeLog for R, and it seems like readDCF was changed
in 3.0.2. I went on a whim and copied src/main/dcf.c from R 2.15.3
over to 3.2.2, and R compiled fine and install.packages now work for
me.
This is probably not ideal, but it at least makes R usable on AIX for
me. Would definitely like to help figure out what's wrong with the
new dcf.c on AIX.
2015 Sep 21
5
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
Hi,
Note that one significant change to read.dcf() that happened since R
3.0.2 is the addition of support for arbitrary long lines (commit
63281), which never worked:
dcf <- paste(c("aa: ", rep(letters, length.out=10000)), collapse="")
writeLines(dcf, "test.dcf")
nchar(read.dcf("test.dcf"))
# aa
# [1,] 8186
The culprit being line
2015 Sep 21
0
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
On 21/09/2015 1:49 PM, Vinh Nguyen wrote:
> Here's an update:
>
> I checked the ChangeLog for R, and it seems like readDCF was changed
> in 3.0.2. I went on a whim and copied src/main/dcf.c from R 2.15.3
> over to 3.2.2, and R compiled fine and install.packages now work for
> me.
>
> This is probably not ideal, but it at least makes R usable on AIX for
> me.
2015 Sep 21
0
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
Hi there,
I just wanted to follow up on this readDCF issue with install.packages
on AIX on R 3.*. I'm happy to help try potential solutions or debug
if anyone could point me in the right direction.
To re-cap, it appears readDCF is segfault'ing since R 3.* on AIX.
This was not the case up until R 2.15.3. This makes install.packages
not usable. Thanks.
-- Vinh
On Tue, Nov 11, 2014 at
2015 Sep 21
0
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
On 21/09/2015 4:50 PM, Herv? Pag?s wrote:
> Hi,
>
> Note that one significant change to read.dcf() that happened since R
> 3.0.2 is the addition of support for arbitrary long lines (commit
> 63281), which never worked:
>
> dcf <- paste(c("aa: ", rep(letters, length.out=10000)), collapse="")
> writeLines(dcf, "test.dcf")
>
2015 Sep 22
1
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
On Tue, Sep 22, 2015 at 1:46 AM, Duncan Murdoch
<murdoch.duncan at gmail.com> wrote:
> However, Herve's second example does illustrate a bug I can reproduce:
> one character out of 10000 was read incorrectly. Could you please try
> his final patch and see if it fixes your AIX problems?
Just tried the latest dcf.c from R-dev and install.packages no longer
segfaults from
2015 Sep 22
2
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
On Mon, Sep 21, 2015 at 2:48 PM, Duncan Murdoch
<murdoch.duncan at gmail.com> wrote:
> On 21/09/2015 4:50 PM, Herv? Pag?s wrote:
>> Hi,
>>
>> Note that one significant change to read.dcf() that happened since R
>> 3.0.2 is the addition of support for arbitrary long lines (commit
>> 63281), which never worked:
>>
>> dcf <- paste(c("aa:
2015 Oct 09
2
R 3.2.2 64 bit compilation error on AIX
One other note: I'm also using the latest src/main/dcf.c that was
giving an issue on AIX previously; see
[this](https://stat.ethz.ch/pipermail/r-devel/2015-September/071781.html)
thread.
Thanks.
On Thu, Oct 8, 2015 at 6:51 PM, Vinh Nguyen <vinhdizzo at gmail.com> wrote:
> Please note that if I don't specify those variables, then R 32 bit
> compiles fine. Thanks.
>
> --
2015 Oct 09
2
R 3.2.2 64 bit compilation error on AIX
Dear list,
I'm following the instructions provided here to compile R 64 bit on
AIX 6.1. I did
export OBJECT_MODE=64
export CC="gcc -maix64 -pthread"
export CXX="g++ -maix64 -pthread"
export FC="gfortran -maix64 -pthread"
export F77="gfortran -maix64 -pthread"
export CFLAGS="-O2 -g -mcpu=power6"
export FFLAGS="-O2 -g -mcpu=power6"
2015 Sep 22
0
segfault with readDCF on R 3.1.2 on AIX 6.1 when using install.packages
On 21/09/2015 10:20 PM, Vinh Nguyen wrote:
> On Mon, Sep 21, 2015 at 2:48 PM, Duncan Murdoch
> <murdoch.duncan at gmail.com> wrote:
>> On 21/09/2015 4:50 PM, Herv? Pag?s wrote:
>>> Hi,
>>>
>>> Note that one significant change to read.dcf() that happened since R
>>> 3.0.2 is the addition of support for arbitrary long lines (commit
>>>
2015 Oct 09
2
R 3.2.2 64 bit compilation error on AIX
>>>>> Vinh Nguyen <vinhdizzo at gmail.com>
>>>>> on Thu, 8 Oct 2015 20:21:32 -0700 writes:
> Ahh, sorry for not googling the error message. Found
> [this](http://r.789695.n4.nabble.com/Error-compiling-R-2-10-1-on-AIX-td1017862.html)
> post that suggests modifying /src/extra/tre/tre-internal.h
>
2016 Mar 02
2
install.packages() fails with drat repository on networkdrive
Dear all,
install.packages("lme4") fails with error
Error in read.dcf(file = tmpf) : cannot open the connection
In addition: Warning message:
In read.dcf(file = tmpf) :
cannot open compressed file
'//servername/repository_path/bin/windows/contrib/3.2/PACKAGES',
probable reason 'No such file or directory'
the repositories set in .Rprofile are
2009 Sep 03
1
building r packages for windows on a mac/linux
--- On Thu, 3/9/09, Vinh Nguyen <vinhdizzo at gmail.com> wrote:
> hi hin-tak,
>
> i'm trying to build r packages for windows on a
> mac/linux. i guess
> this used to possible and supported, but is no longer
> supported. i
> ran into this post of yours,
> https://stat.ethz.ch/pipermail/r-devel/2009-July/053971.html,
> and hope
> u don't mind me
2010 Oct 25
4
google voice + asterisk: calls made to GV# processed but weird
Dear all,
First off, I am very new to asterisk so forgive me if any of my
comments or questions seem trivial. Thanks to [this
post](http://blog.polybeacon.com/2010/10/17/asterisk-1-8-and-google-voice/)
and [this post](http://www.davidvossel.com/?p=28), I have GV set up on
asterisk through jabber.conf and gtalk.conf. I can successfully dial
out from asterisk.
I'm trying to set up an
2011 Aug 26
1
issue with available.packages() and download.file()
Dear R-Users,
I think I have encountered a potential bug (or at least unwanted behavior),
but I'm not sure so I wanted to post here first. Lately I've been
encountering an error when running a package I put together. I have my
package set up to check for updates when it loads but this error occurs and
stops the package from loading:
Error : .onLoad failed in loadNamespace() for
2008 Dec 14
2
Help required to install package from a website
Hi,
I am new to R and I'm looking to perform some method comparison
analysis and would be grateful for some help regarding package
installation.
There is a package 'MethComp' that I want to use
(http://staff.pubhealth.ku.dk/~bxc/MethComp/Courses/Sthm.2007/.)
Unfortunately I am unable to install it. I have tried numerous
approaches but to no avail. this is the first time I have tried to
2006 Aug 29
1
PATCH: Add fields argument to installed.packages and available.packages
Hi all,
The write_PACKAGES function has a 'fields' argument that allows a user
generating a PACKAGES file to specify additional fields to include.
For symmetry, it would be nice for the available.packages function to
be able to read those extra fields when specified.
Similarly, it would be useful for installed.packages to have a
'fields' argument. This would allow a user to
2010 Mar 30
1
update.packages() and install.packages() does not work more because of "Error in read.dcf"
Hi,
on all my systems update.packages() and install.packages() fails now. I
get the following message:
root at orca:/root(28)# R
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or
2008 Jul 03
1
Installation of packages via GUI, Mac OS X
All,
I'm running R v2.7.1 on Mac OS X. When I go to the R package installer GUI,
I am not prompted to select a repository. The usual screen is there but
the columns for package, installed version, and repository version are all
populated via blank entries.
If I select "Get List" the error below occurs. The same thing occurs if I
go form the command line via install.packages.
2008 Mar 10
3
internet proxy settings (win)
I cannot access internet through R.
My IT-guys told me that I should set the proxy and the port and then
everything will be fine. Where can I set them?
I use R 2.6.2 under Windows 2000 and these settings are those of the
Internet Explorer (no password).
I read http://cran.at.r-project.org/bin/windows/base/rw-FAQ.html#The-Internet-download-functions-fail_002e
but staring R by
"C:\Program