similar to: CRAN check fails on Solaris, any hints why?

Dirk, thank you a thousand times. Indeed, src/Makevars was wrong. I modified Makevars so that now looks like the below and the package now compiled and linked properly. CXX_STD = CXX11 PKG_LIBS += $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(shell ${R_HOME}/bin/Rscript -e "RcppParallel::RcppParallelLibs()") PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -I../inst/include

When I install an R package with cpp codes such as rrcov via CRAN (under R 3.1.1, using no Makevars file and under Ubuntu 14.04 using GCC 4.8), the cpp code is compiled with the -o3 flag (in fact, looking at the Makeconf file this seem to again be the default since R 3.1.1) But when I install my own package via CRAN it is compiled with the -o2 flag. My questions are what is causing my

Dear R experts, recently I started developing a Rcpp package "OpenMPTest". Within that package I want to use OpenMP, as in the following code example: // header file #include <omp.h> using namespace Rcpp ; RcppExport SEXP testOpenMP( SEXP nThreads ) ; // cpp file SEXP testOpenMP( SEXP nThreads ) { BEGIN_RCPP NumericVector numberThreads = NumericVector( nThreads );

Dear all, I was playing around with factor contrasts, and found the argument nmax on function factor. When using nmax=1, R froze completely, and I had to close it from task manager. After some debugging, I found that the problem is actually in unique-function, where the internal unique function is called: .Internal(unique(x, incomparables, fromLast, nmax)) More generally, it looks like

Dear all, I'd like to discuss about a possible bug in function StructTS of stats package. It seems that the function returns wrong value of the log-likelihood, as the added constant to the relevant part of the log-likelihood is misspecified. Here is an simple example: > data(Nile) > fit <- StructTS(Nile, type = "level") > fit$loglik [1] -367.5194 When computing the

Dear all, The definition of the initial covariance matrix P in StructTS function seems to be defined in a somewhat non-standard way without any references. Usually that matrix is defined as a diagonal matrix in case of structural time series models, but StructTS defines this as a singular matrix filled with 1e+06 * var(x, na.rm = TRUE)/100 where x is the time series being modelled. I wonder if

Dear R users: I have a problem when installing the R package *gsl*. The procedure is as follows: (1) Since it needs a GSL vesion >=1.12, and the GSL library on the serve I use is too old, I download GSL 1.15 and install it in my own account, such as $HOME/local/gsl. Because I do not have root access, so it cannot be installed in standard folder. (2) Then I download the source code of R

hello I maintain the gsl R package, and many users have recently reported that the package does not install from source under macosx 10.9 ("mavericks"). Users typically install the gnu GSL library and are able to compile and run a small "hello world" program which executes some of the Bessel functionality of the library; but under mavericks the configure script (which uses

Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object

Hello, Novice programmer. I'm writing C source code and compiling it in as *.dll in the terminal by R CMD SHLIB foo.c. It works, I'm on a 64 bits windows system. I have the lastest R 2.15.0 and Rtools using the gcc 4.6.3 compiler. However, that was a hello world run, and I installed GSL for the 64 bit system for fast MCMC. The Rcpp package was easy to use, but I opted for a C with GSL

Hello, I tried this posted on the R devel subforum but no help so far. Maybe the wider net will be fruitful. Probably a pretty simple issue. The short story goes, I'm writing C source code and compiling it in as *.dll in the windows terminal by R CMD SHLIB foo.c. It works, I'm on a 64-bit system. I have the lastest R 2.15.0 and Rtools, and I am using the gcc 4.6.3 compiler. However,

The build system rolled up R-3.0.0.tar.gz (codename "Masked Marvel") this morning. The list below details the changes in this release. You can get the source code from http://cran.r-project.org/src/base/R-3/R-3.0.0.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team Peter Dalgaard

The build system rolled up R-3.0.0.tar.gz (codename "Masked Marvel") this morning. The list below details the changes in this release. You can get the source code from http://cran.r-project.org/src/base/R-3/R-3.0.0.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team Peter Dalgaard

Dear all, I'm trying to debug my R package with valgrind, but I cannot get past the point where I load make the data, as valgrind crashes when trying to extract a single time series object of a multivariate mts object. I'm using R 2.15.0 with platform x86_64-redhat-linux-gnu (64-bit). The valgrind.R contains code data(Seatbelts) y<-Seatbelts[,"VanKilled"] And I run