Displaying 20 results from an estimated 500 matches similar to: "Segfault on ubuntu 18.04"
2018 Jul 05
0
Segfault on ubuntu 18.04
Hi Steve,
On 2018-07-05 21:49, Steve Gutreuter wrote:
> Hi G?ran,
>
> I do not have a solution for your problem, but I can confirm that R
> 3.5.1 runs correctly for me from the shell prompt on Ubuntu 18.04.
> However, I compiled R 3.5.1 from the source tarball, so the problem
> might be with the Ubuntu deb.
>
> Have you tried completely removing R and then re-installing
2018 Jul 06
0
Segfault on ubuntu 18.04
Just as one more datapoint: I cannot reproduce the segfault, with
R 3.5.1 on (L)Ubuntu 18.04. (I use the Ubuntu package, i.e. I did not
build from source.)
regards
Enrico
Quoting G?ran Brostr?m <goran.brostrom at umu.se>:
> I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run
> R from the bash prompt, I get (reinstalling r-base doesn't help)
>
2012 May 15
1
KEGGSOAP installation error
Hello,
I'm trying to install KEGGSOAP with bioconductor but i'm facing this
problem:
/> biocLite("KEGGSOAP")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.4.
Installing package(s) 'KEGGSOAP'
trying URL
'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz'
Content type
2009 Jan 07
1
Compiling R for Solaris 10 Intel
Hi,
I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install)
I found that it compiled and went through the tests fine.
The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?
2013 Jun 07
1
cannot load pbdMPI package after compilation
Hello,
I try to install pbdMPI.
Compilation successful, but load fails with segfault.
Is anyone can help me?
R version 3.0.0
pbdMPI version 0.1-6
Intel compiler version 13.1.1
OpenMPI version 1.6.4-1
CPU Intel x86_64
# R CMD INSTALL pbdMPI_0.1-6.tar.gz
..
....
checking for gcc... icc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name...
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
R Help List:
Just curious if anyone has successfully built R on a SPARC
platform running Sun Solaris 10 using the latest Sun Studio
12 set of compilers. If so, I would be interested in the
compile flags that you used.
I have tried several different builds of version 2.5.1, 2.6.0,
and 2.6.1 using various different compile flags and I am able
to compile and check, but for whatever reason, the
2012 Feb 23
1
segfault when using data.table package in conjunction with foreach
Hi all,
I'm trying to use the package read.table within a foreach loop. I'm
grabbing 500M rows of data at a time from two different files and then
doing an aggregate/tapply like function in read.table after that. I
had planned on doing a foreach loop 39 times at once for the 39 files
I have, but obviously that won't work until I figure out why the
segfault is occurring. The
2018 Sep 19
5
segfault issue with parallel::mclapply and download.file() on Mac OS X
I have an lapply function call that I want to parallelize. Below is a very
simplified version of the code:
url_base <- "https://cloud.r-project.org/src/contrib/"
files <- c("A3_1.0.0.tar.gz", "ABC.RAP_0.9.0.tar.gz")
res <- parallel::mclapply(files, function(s) download.file(paste0(url_base,
s), s))
Instead of download a couple of files in parallel, I get a
2008 Mar 12
1
gracefully handing a library load error
I have an R program I am attempting to use to generate some SVGs. I've been
using the cairoDevice library. When running a session not connected to an X
session (like if I'm sshed in), attempting "library(cairoDevice)" causes:
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE =
2012 Feb 06
1
Segfault on ".C" registration via R_CMethodDef according to 'Writing R Extensions'.
Dear R List,
I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions"
that leads to a segmentation fault (tested on windows and mac os x).
The registration mechanism for ".C" routines via R_registerRoutines and
the R_CMethodDef structure has been enhanced recently with the
addition of two fields, one
2018 Nov 23
1
[tryExcept] New try Function
Hi Emil,
First, thanks for the response. As you mentioned, a lot of times tryCatch
does the work, as you can return a value. However, sometimes it is useful
to assign several variables when an error occurs. You could do it with <<-,
but I prefer to reduce it's usage unless completely necessary.
I guess that the attachment was missed in the moderation. Here it is the
function:
2010 Feb 08
2
Error on start R in server
Hello all,
(Thank for your reply)
I have a web-application in Apache Tomcat, when i start R in this
application,
I used packe RSJava
Code
ROmegahatInterpreter interp;
String [] rargs = {"--no-save"};
REvaluator e;
interp = new ROmegahatInterpreter (
ROmegahatInterpreter.fixArgs(rargs),false );
e =new REvaluator ();
Errors
================
R version 2.10.1 (2009-12-14)
2010 Nov 16
2
Debugging segfault in foreach
Hi,
I'm using R-2.12 on a linux 64bit machine.
When I run a chunk of code inside a foreach() %do% { ...} or %dopar%
{...} (with doMC backend) I keep getting a segfault. Running the
*same* code within lapply(something, function(x) ... ) doesn't result
in any segfaults. I'll paste the output below, but I'm not sure it
would be helpful.
I'm more curious how to go about smoking
2009 Dec 30
1
seg-fault... but on what
I got the following after running succesfully through this loop 28 million
times... the loop opens text files in a directory and inserts line by line
into a database...
*** caught segfault ***
address 0xc0000010, cause 'memory not mapped'
Traceback:
1: .getGeneric(f, where, package)
2: getGeneric("coerce", where = where)
3: as(obj, "integer")
4:
2010 Oct 10
1
segfault caused by `icfit` in `interval` package
Dear R community,
I am using the R package `interval` in order to perform some modelling
tests of the
NPMLE convergence in the case of censoring. So all I am doing is drawing a
sample
from exponential distribution, making it a censored sample and computing the
NPMLE of
its distribution function. But when run on Linux Calculate 10.4 the program
keeps
crashing and reporting a segmentation fault
2010 Mar 25
1
*** caught segfault *** address 0x18, cause 'memory not mapped'
Hello R Community,
I've been run the following codes. However, I've been getting an
unusual segfault
that I'm unable to trace its origin. Please give me a light to
decipher the "caught segfault"
Thanks for you attention.
Bernardo.
> options(STERM='iESS', editor='emacsclient')
> rm(list = ls())
> > source("fgenIGLD.R") #RNG
2017 Sep 21
2
rcorr error in R stat
Hello,
Please keep this on the list, always cc r-help.
One of the files in your attachment is empty:
y <- read.csv(file.choose("GT.csv"))
Error in read.table(file = file, header = header, sep = sep, quote = quote,? :
? no lines available in input
Rui Barradas
?
Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>:
> Thank you so much for your input.
>
> I am
2017 Sep 21
0
rcorr error in R stat
Hello,
Also, the other file, NPA.csv, is not in tabular form. Can you please
reformat it?
Rui Barradas
Citando ruipbarradas at sapo.pt:
> Hello,
>
> Please keep this on the list, always cc r-help.
> One of the files in your attachment is empty:
>
> y <- read.csv(file.choose("GT.csv"))
> Error in read.table(file = file, header = header, sep = sep, quote =
2009 Mar 20
1
sprintf causes a segfault (PR#13613)
Full_Name: Wacek Kusnierczyk
Version: 2.8.0 and 2.10.0 r48163
OS: Ubuntu 8.04 Linux 32bit
Submission from: (NULL) (129.241.198.172)
the following code illustrates a problem with sprintf which consistently causes
a segfault when applied to certain type of arguments. it also shows
inconsistent consequences of the segfault:
(e = tryCatch(stop(), error=identity))
# e is an error object
2019 Nov 11
2
R en Jupyter Lab, error al cargar dplyr: "namespace 'rlang' 0.3.4 is being loaded, but >= 0.4.0 is required"
Hola
Quiero ejecutar R desde Jupyter Lab y me encuentro con un error al invocar
la librería dplyr. Este error no aparece cuando ejecuto RStudio.
La sesión de R en jupyter lab:
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)
Matrix products: default
locale:
[1] LC_COLLATE=Spanish_Chile.1252