similar to: rstan warning messages

Confirmed that gcc-gfortran is installed Package gcc-gfortran-4.4.7-16.el6.x86_64 already installed and latest version What could I check next? I do not have the following installed and will get that done and tested again. libcurl-devel libidn-devel Thanks, Larry -----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: Wednesday, January 27, 2016

Dear R-devel: The Cluster administrators at KU got enthusiastic about testing R-3.2.2 with Intel MKL when I asked for some BLAS integration. Below I forward a performance report, which is encouraging, and thought you would like to know the numbers. Appears to my untrained eye there are some extraordinary speedups on Cholesky decomposition, determinants, and matrix inversion. They had

Got past my libgfortran issue ln -s /usr/lib64/libgfortran.so.3 /usr/lib/libgfortran.so Now if I could get RCurl and rstan installed. Thanks, Larry -----Original Message----- From: Tom Callaway [mailto:tcallawa at redhat.com] Sent: Friday, January 29, 2016 2:46 PM To: Patrick, Larry B [CSSM] <longplay at iastate.edu>; 'r-sig-fedora at r-project.org' <r-sig-fedora at

Both RCurl and rstan seem to have installed now. Did the following on my RHEL6 server: [root at ping ~]# export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/ [root at ping ~]# /usr/bin/curl-config --libs -L/usr/lib64 -lcurl Now the output from your previous commands look like: [root at ping ~]# pkg-config --list-all |grep libcurl libcurl

Looks to have libgfortran installed. yum list installed | grep libgfortran libgfortran.x86_64 4.4.7-16.el6 @rhel-x86_64-server-6 What else could I check? Installed libcurl-devel and libidn-devel. yum list installed | grep libcurl libcurl.x86_64 7.19.7-46.el6 @rhel-x86_64-server-6 libcurl-devel.x86_64

On 02/03/2016 09:52 AM, Tom Callaway wrote: > Are you trying to build R and components for i686 rather than x86_64? Never mind. Your logs make it clear that you're building for x86_64. Can you share the output of: pkg-config --list-all |grep libcurl curl-config --libs rpm -V libcurl-devel libcurl I'm honestly baffled as to why the configure script is failing to find libcurl.pc on

Tom, First of thanks for setting up your RHEL-6 VM to help me! Until I did that link it would not install. I didn't have any libgfortran files in /usr/lib so I did that soft link. Maybe something didn't fully install or configure. I have inherited this machine from another admin and it is not a fresh installation. [root at ping /]# ls -l /usr/lib64/libgfortran* lrwxrwxrwx 1

Hi Paul, We've been through this process ourselves for the Revolution R Open project. There are a number of pitfalls to avoid, but you can take a look at how we achieved it in the build scripts at: https://github.com/RevolutionAnalytics/RRO There are also some very useful notes in the R Installation guide: https://cran.r-project.org/doc/manuals/r-release/R-admin.html#BLAS Most packages do

Hello, I'm using R 2.5.0 with OS X 10.4.9 and Xcode 2.4.1 on a PowerPC. My code used to compile fine with R 2.4.* and Xcode 2.2 (I think). I'm compiling some C code (named mhroc_prop.c) that calls a fortran routine from mvndstpack.f I get the error /usr/bin/libtool: file: mvndstpack.o is not an object file (not allowed in a library) after R outputs (sorry... not sure if this is

On 27 April 2017 at 12:01, Johannes Ranke wrote: | | > so it seems to me this must affect all packages in Debian sid that were | > built before the release of R 3.4.0! | | or rather before 14 April 2017, which is when R from revision r72510 was | uploaded to sid as pre-release candidate. Another example with KernSmooth: > library(KernSmooth) KernSmooth 2.23 loaded Copyright

On 01/28/2016 09:07 AM, Patrick, Larry B [CSSM] wrote: > Looks to have libgfortran installed. > yum list installed | grep libgfortran > libgfortran.x86_64 4.4.7-16.el6 @rhel-x86_64-server-6 > What else could I check? > > Installed libcurl-devel and libidn-devel. > yum list installed | grep libcurl > libcurl.x86_64

I am getting error messages while installing R package lme4. Please advice thanks Pramod trying URL 'http://cran.mtu.edu/src/contrib/lme4_0.999999-0.tar.gz' Content type 'application/x-gzip' length 1074142 bytes (1.0 Mb) opened URL ================================================== downloaded 1.0 Mb * installing *source* package 'lme4' ... ** package

I used epel to install again. I removed the original installation that seemed from epel also. [root at ping /]# pkg-config --list-all |grep libcurl [root at ping /]# That doesn't look good. [root at ping /]# curl-config --libs Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the

Agustin, posted on R-help. I think the problem is one of the debian/ubuntu package 'r-cran-robustbase' and its setup or (missing?) dependencies. I can confirm Agustin's problem, working on Ubuntu 8.04.2 (8.04 is a "LTS" = long time support version). apt-get install r-cran-robustbase works fine, but when trying to load the package, there's a DLL - dependency on

Dear All, I have been trying to compile a package for windows that we have written. Since R version 3.0.0 the package doesn't compile any more. (On Linux the package compiles without errors). The error specifically says: gcc -m32 -I"C:/PROGRA~1/R/R-30~1.0/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c

---------- Forwarded message ---------- From: Akhil dua <akhil.dua.12@gmail.com> Date: Wed, Jul 4, 2012 at 10:33 AM Subject: To: r-help@r-project.org Hi everyone I have data on stock prices and market indices and I need to run a seperate regression of every stock on market so I want to write a "for loop" so that I wont have to write codes again and again to run the

Hi there, I'm trying to install the package RcppArmadillo in my R 2.11.1 which I installed and regularly update via Ubuntu's repositories. When I try to install RcppArmadillo from CRAN I get: > install.packages('RcppArmadillo', lib='~/myRlibs') [...] g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o -L/home/matias/myRlibs/Rcpp/lib -lRcpp

Subject: Re: [R-sig-Debian] ubuntu problem with 'r-cran-robustbase' [FWD Agustin Lobo] Date: Tue, 12 May 2009 13:30:49 +0200 From: Agustin Lobo <aloboaleu at gmail.com> Reply-To: aloboaleu at gmail.com To: Dirk Eddelbuettel <edd at debian.org> CC: Martin Maechler <maechler at stat.math.ethz.ch>, R-SIG-Debian at stat.math.ethz.ch References: <18953.17704.527898.355877

dear members, I am using R to model stock prices but a slow "for" loop has stifled my research. I am using Rcpp to speed up my "for" loop. I am also using RcppEigen to implement block operations on xts objects..... how do I use RcppEigen? If I just load it by: > require(RcppEigen) it is not recognising the .block method in C++. If I include it inside

Hi, apparently you are using the backport of R 3.4.2, which provides r-api-3.4. With this backport installed, you cannot use the binary packages from the stretch archive. > | The following packages have unmet dependencies: > | r-cran-car : Depends: r-api-3 > | > | Depends: r-cran-pbkrtest but it is not going to be installed > | Depends: