similar to: temporary clipping

Is there a way to include the compiled version of a vignette in the doc directory but mark it to NOT be rerun by CRAN??? I think I remember that this is possible, but have forgotton how.?? (It might even be a false memory.) Terry T. Background:? Beth Atkinson and I are splitting out many of the vignettes from the survival package into a separate package survivalVignettes.? There are a few

I haven't done any R memory debugging lately, but https://www.mail-archive.com/rcpp-devel at lists.r-forge.r-project.org/msg10289.html shows how I used to have gdb break where valgrind finds a problem so you could examine the details. Also, running your code after running gctorture(TRUE) can help track down memory problems. -Bill On Wed, Feb 7, 2024 at 12:03?PM Therneau, Terry M., Ph.D.

?I've hit a roadblock debugging a new update to the survival package.?? I do debugging in a developement envinment, i.e. I don't create and load a package but rather? source all the .R files and dyn.load an .so file, which makes things a bit easier. ? Running with R -d "valgrind --tool=memcheck --leak-check=full" one of my test files crashes in simple R code a dozen lines

I found an issue with the data() command this evening when working on the survival package. 1. I have a lot of data sets in the package, almost all used in at least one vignette, help file, or test.? As a space saving measure, I have bundled many of them together, i.e., the file data/cancer.rda contains 19 data sets, many of them small. The resulting file (using xz compression) is quite a bit

Hello! When I draw points on grid's viewport with clip set to TRUE clipping does not have effect on some symbols. It happens only when drawing over gtkDevice (GTK ver. 1.2) (with postscript device clipping works OK - take a look at this screenshot http://www.hppi.troitsk.ru/Kondrin/clipbug.png) and only with symbols that are drawn with commands other than gdk_draw_polygon() (i.e. circles

I am plotting subsets of my data, using ylim. This works fine, but the outer margin line widths of the plot are thin, due to clipping. If I include > trellis.par.set(clip=list(panel = "off")) then the outer margin line widths are fine, but the outlying data is visible. Is there any way of achieving both correct margin line widths and clipping of outlying data? Thanks, Dan Bebber

I've created some Splus code for a microarray problem that - needed to be in C, to take advantage of some sparse matrix properties - uses a cholesky decompostion as part of the computation For the cholesky, I used the cholesky2 routine, which is a part of the survival library. It does just what I want and I'm familiar with it (after all, I wrote it). In Splus, this all works

------------- Begin Forwarded Message ------------- Date: Wed, 5 Jul 2006 09:09:14 -0500 (CDT) From: Terry Therneau <therneau at mayo.edu> Subject: RE: Problem with coxme To: jhz22 at medschl.cam.ac.uk Cc: R-help at stat.mat.ethz.ch, liulei at virginia.edu, spencer.graves at pdf.com Content-MD5: BXKVsHtW/1I9mIUqrXBU0g== The original question involved a strange error message from coxme

-------- Original Message -------- Subject: Re: How to obtain nonparametric baseline hazard estimates in the gamma frailty model? Date: Mon, 04 Nov 2013 17:27:04 -0600 From: Terry Therneau <therneau.terry at mayo.edu> To: Y <yuhanusa at gmail.com> The cumulative hazard is just -log(sfit$surv). The hazard is essentially a density estimate, and that is much harder. You'll notice

When I run R CMD check on the survival package I invariably get a note: ... * checking for file ?survival/DESCRIPTION? ... OK * this is package ?survival? version ?3.2-6? * checking CRAN incoming feasibility ... NOTE Maintainer: ?Terry M Therneau <therneau.terry at mayo.edu>? ... This is sufficient for the auto-check process to return the following failure message: Dear maintainer,

I'm baffled as to how the Lattice package achieves clipping. Would someone mind explaining this to me? Firstly, my attempt using "just" the grid package: x<-seq(0,3,by=0.3)/2.8 y<-seq(0,1,by=0.1) grid.newpage() grid.rect(gp=gpar(fill="pink")) vp<-viewport(width=0.8, height=0.8) pushViewport(vp) grid.rect(gp=gpar(fill="white")) grid.xaxis()

Hi. Today most modern CDs are recorded using maximum volume (so that it grabs more of your attention when the song is being played on the radio - even though this destroys the dynamic range). Anyway lossy audio codecs can introduce clipping - audio distortion when the sound hits maximum peak value, so I thought I should ask if Vorbis has this solved? --- >8 ---- List archives:

I noticed that clipping occurs in lossy audio compression even if there is no clipping in the original file (though the original file has peaks that are just below the maximum). I know that this happens due to all the filtering involved during compression, but I'm wondering just how audible this clipping is because I don't hear anything wrong. I mean, as things are now, is it safe to say

On Wed, 2 Aug 2000 p.dalgaard@biostat.ku.dk wrote: > Martin Maechler <maechler@stat.math.ethz.ch> writes: > > > (from R-help) > > PD> Stephen Eglen <stephen@cogsci.ed.ac.uk> writes: > > > > > > > generated by R into a latex document. Specifically, the latex package > > > > > graphicsx allow you to specify the

I cloned therneau/survival and the installation failed since there is no definition for exported function survfit(). A file seems to be missing - there is survfit0() and survfit0.R but, compared to CRAN, no survfit.R. Georgi Boshnakov ---------------------------------------------------------------------- Message: 1 Date: Thu, 05 Sep 2019 12:53:11 -0500 From: "Therneau, Terry M.,

Martin Maechler <maechler@stat.math.ethz.ch> writes: > (from R-help) > PD> Stephen Eglen <stephen@cogsci.ed.ac.uk> writes: > > > > > generated by R into a latex document. Specifically, the latex package > > > > graphicsx allow you to specify the bounding box of the postscript > > > > file, so that you can just show

Hi there, I'm trying to find out the command to stop clipping to plot region in ggplot. I have a bar chart (axis flipped) with labels on the bars, but the labels are clipped at the plot region box. I know it's possible to turn this off for base and lattice, but how about ggplot? par(xpd=NA) The ggplot2 manual doesn't seem to mention it, and a search for ggplot and

Yes, that is exactly the problem.? The code found in the "config" script is never run.? But why doesn't it get run? On 9/6/19 5:44 AM, Georgi Boshnakov wrote: > I cloned therneau/survival and the installation failed since there is no definition for exported function survfit(). > A file seems to be missing - there is survfit0() and survfit0.R but, compared to CRAN, no

I'm trying to plot pspline'd explanatory variables from coxph() models as per Therneau and Grambsch (Modeling Survival Data: Extending the Cox Model). They have s-plus functions for this at: http://www.mayo.edu/hsr/people/therneau/book/sfunction/gamterms.s http://www.mayo.edu/hsr/people/therneau/book/sfunction/plotterm.s I'd like to make these plots in R, but they make use of non-R

It's hard to diagnose this without your package sources / a reproducible example. Shot in the dark: one thing worth checking is that you don't have an entry in your `.Rbuildignore` that's removing files you don't expect it to (maybe that's causing R to strip out the 'doc/index.html' file) Kevin On Fri, May 15, 2015 at 12:54 PM, Therneau, Terry M., Ph.D. <therneau