similar to: Get term from document by position

mple (see attachment). > > Attachments get stripped out by the mailing list, so I?ve made a private gist of the two files here: <https://gist.github.com/jaylett/ce8455b37e2b84422346>. > > Actually, when I run it I get 0 matches, which would explain why you?re just getting the start of the document. However if I adjust things (match the stemming strategy for TermGenerator to

Hi, I've been modelling some data over the past few days, of my work, repeatedly challenging microbes to a certain concentration of cleaner, until the required concentration to inhibit or kill them increaces, at which point they are challenged to a slightly higher concentration each day. I'm doing ths for two different cleaners and I'm collecting the required concentration to

Hi All I have been struggling with this model for some time now and I just can't get it to work correctly. The messages I get when running the code is: DLSODA- Warning..Internal T (=R1) and H (=R2) are such that in the machine, T + H = T on the next step (H = step size). Solver will continue anyway. In above message, R = [1] 0 0 DINTDY- T (=R1) illegal In above message, R = [1]

Dear all, I'm trying reproduce an example of bioassays Yielding Concentration-Mortality Data particularly control - adjustment model from book Bioassay of Entomopathogenic Microbes and Nematodes chapter 7 with R. I used glm with family=binomial and link=probit, but I do not know how to implement parameter gamma (control mortality - mortality of the untreated control insect in this exaple)

Hello, I have two tab-delimited files which I would like to combine. In the first one I have gene IDs (Unique) on column 1 and than various experimental results from microarray analysis (see attached files list1 ) the second arrays have the same genes IDs (more and in a different order, some are double) (see attached files list2 ) What I would like to do is to search in the second list for gene

-------- Original Message -------- Subject: Re: [R] Simulation - Natrual Selection Date: Wed, 05 Jan 2011 17:24:05 +0000 From: Ben Ward <benjamin.ward@bathspa.org> To: Bert Gunter <gunter.berton@gene.com> CC: Mike Marchywka <marchywka@hotmail.com> On 05/01/2011 17:08, Bert Gunter wrote: > Couple of brief comments inline below. -- Bert > > On Wed, Jan 5, 2011 at

Hi, I'm doing some modelling (lm) for my 3rd year dissertation and I want to do some resampling, especially as I'm working with microbes, getting them to evolve resistance to antimicrobial compounds, and after each exposure I'm measuring the minimum concentration required to kill them (which I'm expecting to rise over time, or exposures), I have 5 lineages per cleaner, and

Getting the through items from a has_many :through :uniq relationship In a nutshell, I have been using the has_many :through :uniq relationship, and I want a DRY way to list the join model objects. Currently, my objects include taxon objects, toxin objects, data_object objects, and taxon_toxin_citation objects ("citation" is another word for data_object). A taxon has many data objects,

Good afternoon all - While making a steady progress in learning R after Matlab I encountered a problem which seems to require some extra help to move over. Basically I want to merge a data from biological statistical dataset with annotation data extracted from another dataset using an 'id' crossreference and write it to report file. The first part goes absolutely fine, I have merged both

Hi, Any folks on this list who have installed CentOS 6.3 on the new Dell Poweredge R815 servers? How was your experience? Thanks -Surya -- Surya Saha Department of Plant Pathology and Plant-Microbe Biology Cornell University, NY, USA http://www.linkedin.com/in/suryasaha

Hello R-listers, I'm working in an experiment that try to determine the degree of infection of different clones of a fungus and, one of the measures we use to determine these degree is the counting of antibodies in the plasma at different dilutions, in this experiment the maximum number of dilutions was eleven. I already checked for differences on the maximum concentration of the

Hello, I have been attempting to run a poisson glmm using lme4 for some time now and have had a lot of trouble. I would say 9 times out of 10 I receive the following warning: CHOLMOD warning: %h Error in mer_finalize(ans) : Cholmod error `not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432 My data are counts of microbe colony forming units (CFUs) collected from

I have 11 vectors representing insect survival probabilities in response to different levels of toxins at 10 concentrations lx100=c(1,1,1,.8,.5,.4,.2,0) day100=c(0,1,2,3,4,5,6,7,8) lx90=c(1,1,1,1,.9,.8,.6,.4,.2,.1,0) day90=c(0,1,2,3,4,5,6,7,8,9,10) #...and so on10% and a zero (control) series lx0=c(1,1,1,1,1,1,.9,.9,.8,.8,.6,.5,.4,.3,.2,.1,.1,0)

I am looking for the syntax to capture XML tags marked with /DescriptorName MajorTopicYN="Y"/ , but the combination of the internal space (between "Name" and "Major" and the embedded quote marks are defeating me. I can get all the "DescriptorName" tags, but these include both MajroTopicYN = "Y" and "N" variants. Any suggestions?

Hi all, I have this microarray large microarray data set (ALL) from which I would like to subset or extract a set of data based on a factor ($mol.biol). I looked up some example of subsetting in, picked up two commands and tried both but I got error messages as follows > testset <- subset(ALL, ALL$mol.biol %in% c("BCR/ABL","ALL1/AF4")) >> Error in

Asterisk work does not pay all of my bills, so I have joined up with a company that has a very good payment plan. I have recently become a Mona Vie Independent Distributor. I am not going to go into a sales pitch. This is just an FYI to this opportunity. The company has grown into a Billion dollar company in just 2 years. This company's compensation plan is the best and quickest that I have

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Hi all, I''m trying to use the { :prompt => true } option in an erb form. However, not extra option-tag is prepended to the select list. Am I doing something wrong? (Code snipper follows.) <%= select :user, ''person_id'', Person.find(:all, :order => ''last_name, first_name'').collect {|p| [ p.fullname, p.id ] }, {:prompt => true} %> Thanks,

Hey ppl, This is probably something very basic i'm doing wrong but I can't seem to get aorund it after reading the man page, it goes between error 2 and 1, im trying to tftp from a cisco router to my linux box. my in.tftpd.conf file looks like this: INTFTPD_PATH="/usr/tftp" INTFTPD_OPTS="-l ${INTFTPD_PATH}" and ive done a chmod 777 on the above path just to be 100%

I am trying to get the temperature of a Poweredge 2850 with CentOS 6.3 on it. Has anybody on this list done this successfully? Thanks -Surya PS: Apologies for cross posting if you are on the Poweredge list. -- Surya Saha Department of Plant Pathology and Plant-Microbe Biology Cornell University, NY, USA http://www.linkedin.com/in/suryasaha