similar to: pheatmap: incomplete figure

> On Sep 18, 2017, at 9:26 AM, Fix Ace via R-help <r-help at r-project.org> wrote: > > Dear R Community, > I tried to generate heatmap for a matrix of 1500 columns by 106 rows using the following R script: >> pheatmap(tf.vs.DE.1.removeAllZeroCol, fontsize=3,border_color=NA) > and got the graph (as attached Fig 1) > > Since the column labels appear very crowded, I

I would like to output a nicely formatted data frame to a bitmap. Is this possible in R? -- View this message in context: http://r.789695.n4.nabble.com/Table-Frame-output-tp4636790.html Sent from the R help mailing list archive at Nabble.com.

When plotting a heatmap with heatmap.2 the shortest euclidean distance cluster is plotted in the top left corner of the heatmap <http://r.789695.n4.nabble.com/file/n4651430/heatmap.2.jpeg> when plotting the same data with pheatmap the very same cluster is in the bottom right corner <http://r.789695.n4.nabble.com/file/n4651430/pheatmap.jpeg> I am just wondering what I would need

Hello Sir, I have been trying to create a package in R. When I have put the check option in R studio to check everything is ok that time I have found two warnings and three notes. Those are given below. warnings: 1) * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: 'SparseM' 'loadNamespace' or 'requireNamespace' calls

Dear R-developers There is a discrepancy between the variables found by typing names(options()) and the variables described on the help page for the function ``options''. The following variables are in names(options()) but not described on the help page : "error.messages" "repositories" "show.coef.Pvalues" "help.try.all.packages"

libswfdec/swfdec_text_field.c | 2 +- libswfdec/swfdec_text_field_movie.c | 9 ++------- libswfdec/swfdec_text_field_movie_as.c | 29 +++++++++++++++++++++-------- libswfdec/swfdec_xml.c | 16 ++++++++++++++++ libswfdec/swfdec_xml_node.c | 17 ++++++++++++++--- 5 files changed, 54 insertions(+), 19 deletions(-) New commits: commit

libswfdec/swfdec_as_strings.c | 2 + libswfdec/swfdec_html_parser.c | 41 ++++++++++++++++++++--- libswfdec/swfdec_style_sheet.c | 47 +++++++++++++++++++++++++++ libswfdec/swfdec_style_sheet.h | 6 +++ libswfdec/swfdec_text_field_movie.c | 24 +++++++++++-- libswfdec/swfdec_text_field_movie.h | 2 + libswfdec/swfdec_text_field_movie_as.c |

libswfdec/swfdec_text_field.c | 288 ---------------------------------- libswfdec/swfdec_text_field.h | 14 - libswfdec/swfdec_text_field_movie.c | 297 +++++++++++++++++++++++++++++++++++- 3 files changed, 291 insertions(+), 308 deletions(-) New commits: commit 2e79c953066b7f6857e88e7efaaed4d8846e9609 Author: Pekka Lampila <pekka.lampila at iki.fi> Date: Wed Oct 17

libswfdec/swfdec_as_strings.c | 8 + libswfdec/swfdec_codec_audio.c | 1 libswfdec/swfdec_codec_video.c | 1 libswfdec/swfdec_text_field.c | 74 +++++---- libswfdec/swfdec_text_field.h | 5 libswfdec/swfdec_text_field_movie.c | 140 +++++++++++++++--- libswfdec/swfdec_text_field_movie.h | 26 ---

libswfdec/swfdec_text_field_movie.c | 2 ++ 1 file changed, 2 insertions(+) New commits: commit 27e0f570ff653063b78efc89a604236e7fe03ece Author: Pekka Lampila <pekka.lampila at iki.fi> Date: Sat Oct 27 17:14:06 2007 +0300 Init TextField's native properties when TextField is created from a tag diff --git a/libswfdec/swfdec_text_field_movie.c

libswfdec/swfdec_text_field_movie.c | 6 ++++-- test/image/Makefile.am | 7 +++++++ test/image/text-field-color-transform-6.swf |binary test/image/text-field-color-transform-6.swf.png |binary test/image/text-field-color-transform-7.swf |binary test/image/text-field-color-transform-7.swf.png |binary test/image/text-field-color-transform-8.swf

libswfdec/Makefile.am | 14 +- libswfdec/swfdec_as_interpret.c | 4 libswfdec/swfdec_color_as.c | 4 libswfdec/swfdec_graphic_movie.c | 16 ++ libswfdec/swfdec_image_decoder.c | 8 + libswfdec/swfdec_morph_movie.c | 14 ++ libswfdec/swfdec_movie.c

libswfdec/swfdec_as_array.c | 18 +++++++++++++----- libswfdec/swfdec_as_object.c | 2 ++ libswfdec/swfdec_text_field_movie.c | 12 ++++++++---- test/image/Makefile.am | 16 +++++++++++++++- test/image/text-field-autosize-6.swf |binary test/image/text-field-autosize-6.swf.png |binary test/image/text-field-autosize-7.swf |binary

CRAN (and crantastic) updates this week New packages ------------ * EffectStars (1.0) Maintainer: Unknown Author(s): Gunther Schauberger License: GPL-2 http://crantastic.org/packages/EffectStars The package provides functions to visualize regression models with categorical response. The effects of the covariates are plotted with star plots in order to allow for an optical

A new compiz release 0.5.2 is now available from: http://xorg.freedesktop.org/archive/individual/app/compiz-0.5.2.tar.gz which can be verified with: http://xorg.freedesktop.org/archive/individual/app/compiz-0.5.2.tar.gz.sha1 0d0a4a39bfbe0ada770d9206b7a1b6b443c53c29 compiz-0.5.2.tar.gz

libswfdec/swfdec_as_strings.c | 4 libswfdec/swfdec_text_field.c | 1 libswfdec/swfdec_text_field.h | 34 --- libswfdec/swfdec_text_field_movie.c | 265 ++++++++++++++++--------------- libswfdec/swfdec_text_field_movie.h | 47 ++++- libswfdec/swfdec_text_field_movie_as.c | 115 +++++++++++-- test/trace/Makefile.am | 17

Hi List, I am trying unsucessfully to modify the fontsize of lables in mosaic: require(vcd) mosaic(Titanic, pop=FALSE, labeling_args=list(rot_labels=c(bottom=90,top=90), set_varnames = c(Sex = "Gender"), gp_text=gpar(fontsize=20))) #can't get it to resize text tab <- ifelse(Titanic < 6, NA, Titanic) # it works for labeling_cells labeling_cells(text = tab,

Hi list, I am unsuccessfully trying to produce a serious of trellis barcharts from within a for-loop. The barcharts work outside the loop. What am I missing? Example attached. Thanks Herry #XXXXXXXXXXXXXXXXXXXXXX trellis.device(bg="white") trellis.par.get("fontsize")->fontsize fontsize$default<-16 trellis.par.set("fontsize",fontsize)

I have a figure on screen with a legend. I want to copy this image to EPS, and use: dev.copy2eps(file="file1.eps", width=5, height=5) The legend that looks OK on screen doesn't look OK in the PostScript image: the text extends out of the box. I try adding a fontsize command: dev.copy2eps(file="file1.eps", width=5, height=5, pointsize=5) This options seems to

I'm trying to find a way to change the font size in a mosaic plot (the grid version, not the base graphics one). Here's an example to demonstrate: #Basic plot library(vcd) mosaic(HairEyeColor, shade = TRUE) #Bad first guess: this stops the default cell colouring, and doesn't change the font size mosaic(HairEyeColor, shade = TRUE, gp=gpar(fontsize=16)) #This successfully changes