similar to: Installing rpy2 on Red Hat 6

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

I am trying to install R 3.4.0 on RHEL6. If I look here is it there: http://mirror.sjc02.svwh.net/fedora-epel/6/x86_64/ I did this: sudo subscription-manager repos --enable rhel-6-server-optional-rpms sudo subscription-manager repos --enable rhel-6-server-extras-rpms wget https://dl.fedoraproject.org/pub/epel/epel-release-latest-6.noarch.rpm rpm epel-release-latest-6.noarch.rpm Which all

On Fri, Jul 21, 2017 at 11:39 AM, Tom Callaway <tcallawa at redhat.com> wrote: > On 07/21/2017 11:18 AM, Larry Martell wrote: >> I am trying to install R 3.4.0 on RHEL6. If I look here is it there: >> >> http://mirror.sjc02.svwh.net/fedora-epel/6/x86_64/ >> >> I did this: >> >> sudo subscription-manager repos --enable rhel-6-server-optional-rpms

Hi - I am having trouble installing rpy2. I have already compiled R as a shared library, but I do not have admin privileges on so I am trying to install rpy2 with: pip install -user rpy2 but I am getting the following error: ======================================== ./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory compilation terminated. error:

At 06:10 AM 8/2/2020, you wrote: >On 8/2/20 8:04 AM, david wrote: > > > >> <snip> > > > > > > > >> > I'll post here again once we have pushed the EL8 and CentOS Stream > >> updates. > >> > >> OK .. I have also now pushed the CentOS Linux 8 update .. you should see > >> an update to SHIM .. the new

Hi, I am trying to compile R with the command below in order to install rpy2. ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x --enable-R-shlib However, error the I have gotten was: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against `R_FunTab' can not be used when making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad

At 06:37 AM 8/2/2020, Johnny Hughes wrote: >On 8/2/20 8:30 AM, david wrote: > > At 06:10 AM 8/2/2020, you wrote: > >> On 8/2/20 8:04 AM, david wrote: > >> > > >> >> <snip> > >> > > >> > > >> > > >> >> > I'll post here again once we have pushed the EL8 and CentOS Stream > >>

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Hello, I have a problem with package "python-rpy2" with Debian Wheezy repository. I use this repo : deb http://cran.r-project.org/bin/linux/debian wheezy-cran3/ This package depends on "python-singledispatch" but it doesn't exist in official Debian repo... Could you help me to fix this issue ? Thanks a lot,

Hi, Have installed Ubuntu packages for R by adding: deb http:///bin/linux/ubuntu hardy/ to my /etc/apt/sources.list file and using: sudo apt-get update sudo apt-get install r-base I understand that to enable shlib I need to download source files to my home directory. When I run apt-get source r-base I get the message: You must put some 'source' URIs in your sources.list Fair enough!

Hi This is my function. It serves an HTML page after the calculations. I'm connecting to a MSSQL DB using pyodbc. def CAPM(self,client): r=self.r cds="1590" bm="20559" d1 = [] v1 = [] v2 = [] print"Parsing GET Params" params=client.g[1].split("&") for items in

><snip> > > I'll post here again once we have pushed the EL8 and CentOS Stream updates. > >OK .. I have also now pushed the CentOS Linux 8 update .. you should see >an update to SHIM .. the new versions are: > >PowerTools/x86_64/os/Packages/shim-unsigned-x64-15-8.el8.x86_64.rpm >BaseOS/x86_64/os/Packages/shim-ia32-15-15.el8_2.x86_64.rpm

I have a R script that I am running from python with rpy2. On a debian system I run this: apt-get install R-cran-ggplot2 R-cran-caret And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?

Dear list, When calling R from C, what appears like a spurious error can be triggered during the execution of chisq.test(x, y). This is happening when the following conditions are met: - x and y are "anonymous" C-level R vectors (they do not have a symbol), but they are protected from garbage collection - x and y are "not too small" (it was experienced as soon as they are

On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu> wrote: > On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> > wrote: > > > I have a R script that I am running from python with rpy2. On a debian > > system I run this: > > > > apt-get install R-cran-ggplot2 R-cran-caret > > > > And the

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

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I have a R script that I call from python using rpy2. It uses dplyr, doBy, and ggplot2. The script has install.packages commands for these 3 packages. Even thought the packages are already installed it still downloads, builds, and installs them, which is very time consuming. Is there a way to have it only do the install if the package is not already installed? Also, I run in a docker container,

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or