similar to: reshaping the data

Hi Do you want something like dcast(test, Sample~Gene, fun=function(x) paste(x, collapse=",")) or dcast(test, Sample~Gene, fun=function(x) sum(as.numeric(x))) 1 means INDEL, 2 means SNV and three means both Cheers Petr > -----Original Message----- > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Bogdan > Tanasa > Sent: Monday, July 3, 2017 9:22 AM

Hi, I do not really have much direct control over the compile lines any more. I guess I could code up a wrapper for your wrapper so that the libtool wrapper would be happy, but could you all consider libtool built projects and embed the necessary option stripping in your clang-cc thing? Thank you. Regards, Bruce make[2]: Entering directory `/home/bkorb/ag/ag/snprintfv' /bin/sh ../libtool

[retrying send with different email source] Hi, I do not really have much direct control over the compile lines any more. I guess I could code up a wrapper for your wrapper so that the libtool wrapper would be happy, but could you all consider libtool built projects and embed the necessary option stripping in your clang-cc thing? Thank you. Regards, Bruce make[2]: Entering directory

Original Dom0 setup had been done per Todd Deshane''s instruction:- http://deshantm.livejournal.com/29959.html Functionality of SNV89 PV and HVM DomUs tested fine as well as F8 and WinXP HVM guests. Once again, all done as advised at http://deshantm.livejournal.com/29959.html Next i attempted to follow :- https://help.ubuntu.com/8.04/serverguide/C/libvirt.html #

Hi I want t create a demU. but I it require me the NFS location. #virt-install -n xvm1 --paravirt -r 1024 --nographics -f /export/home/xvm1 -s 16 -l /net/t1000-up/software/snv-solarisdvd-x86-77.iso but during installing, it need NFS server. But I set NFS location /net/t1000-up/software/snv-solarisdvd-x86-77.iso. ERROR: You must specify a host who know what''s wrong? If I install demU

x86 snv 108 I have a pool with around 5300 file systems called home. I can do: zfs set sharenfs=on home however zfs set sharenfs="sec=krb5,rw" home complains: cannot set property for ''home'': ''sharenfs'' cannot be set to invalid options I feel I must be overlooking something elementary. Thanks, Alastair -------------- next part --------------

Hi, Can I use some commands or scripts to get CPU temperature on Solaris(10 or snv, whatever)? My laptop is Lenovo T61. Great Thanks Jason

Hi All, I am unable to get the plot geomap in googleVis package. data is as follows > head(index.ret) country ytd 1 Argentina -10.18 2 Australia -3.42 3 Austria -2.70 4 Belgium 1.94 5 Brazil -7.16 6 Canada 0.56 > map1 = gvisGeoMap(index.ret,locationvar = 'country', numvar = 'ytd') > plot(map1) But it just displays a blank page, showing an

Dear all, as the bug # 7991 is flagged not-reproducible, let me give you some pieces of code, as I have the same or similar problem. The problem always shows up with the first example (a small text file) and only sometimes (but without obvious pattern) with the second example, which is a binary file. > download.file("ftp://ftp.nhc.noaa.gov/pub/atcf/btk/bal012006.dat",

Hello, I have the following problem. I am running simulations on possible states of a set of agents (1=employed, 0=unemployed). I store these simulated time series in a matrix like the following, where rows indicates time periods, columns the number of agents (4 agents and 8 periods in this case): Atr=[ 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 1 0 1 0 1 0

Good day, The location of indels can be retrieved from a PairwiseAlignmentsSingleSubject object by using indel. Determining any difference between the two sequences, including substitutions, is not quick nor easy. I suppose that summary displays details of the mismatches, but the variable is of class PairwiseAlignmentsSingleSubjectSummary which has no documented accessors. So, the code to access

I have got a xen aware debian version installed on a logicial partition on my laptop. Is it possible to make OpenSolaris dom0 [snv 76] installed in one of the primary partitions to boot the debian one as a domU? If so, how should the config file look like? thanks. -surya

Hi, I hit ZFS bug that it would be resolve in latter snv 134 or latter. I''m running SNV111 How do I upgrade to latest version ? THanks -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://mail.opensolaris.org/pipermail/zfs-discuss/attachments/20100821/7d8eebc1/attachment.html>

If I have the following definition: provider foo { probe bar(const char*); }; and creates the headerfile (snv 43) with dtrace -h I get: extern void __dtrace_foo___bar(char *); This is a "problem" for me (ok, I could add an explicit cast each time I fire the probe, or edit the generated headerfile by hand...), since it generates compilation errors when I call the probe in a C++

Hello zfs-discuss, Just to be sure - if I create ZFS filesystems on snv_39 and then later I would want just to import that pool on S10U2 - can I safely assume it will just work (I mean nothing new to on-disk format was added or changed in last few snv releases which is not going to be in u2)? I want to put right now (I have to do it now) some data on ZFS and later I want to

yes, i`d second that. maybe you just try using metaflac to generate the appropriate list of files to sync and then feed that list to rsync. > Gesendet: Dienstag, 02. Dezember 2014 um 08:37 Uhr > Von: "Fabian Cenedese" <Cenedese at indel.ch> > An: rsync at lists.samba.org > Betreff: Re: Comparing FLAC header before syncing > > At 02:24 02.12.2014, Mike Garey

I get the following message when using the reshape2 package line > tDat.m<- melt(Dataset) Using Item, Subject as id variables > tDatCast<- acast(tDat.m,Subject~Item) Aggregation function missing: defaulting to length Note Problem Statement- convert dataframe Subject Item Score 1 Subject 1 Item 1 1 2 Subject 1 Item 2 0 3 Subject 1 Item 3 1 4 Subject 2 Item 1 1 5

Hi all, I have a lengthy 'for' loop and for each loop I want to track the iteration number that is currently going on. For this, I have tried following: > for (i in 1:10) { + DumDat <- rnorm(1000) + cat("iteration:", i, " \n") + } iteration: 1 iteration: 2 iteration: 3 iteration: 4 iteration: 5 iteration: 6 iteration: 7 iteration: 8

My system (a laptop with ZFS root and boot, SNV 64A) on which I was trying Opensolaris now has the zpool-related kernel panic reboot loop. Booting into failsafe mode or another solaris installation and attempting: ''zpool import -F rootpool'' results in a kernel panic and reboot. A search shows this type of kernel panic has been discussed on this forum over the last year.

I''ve recently upgraded my x4500 to Nevada build 97, and am having problems with the iscsi target. Background: this box is used to serve NFS underlying a VMware ESX environment (zfs filesystem-type datasets) and presents iSCSI targets (zfs zvol datasets) for a Windows host and to act as zoneroots for Solaris 10 hosts. For optimal random-read performance, I''ve configured a single