similar to: PAM Clustering

Dear Germano, Thank you for your fast reply, In the above code, *MYData *is the actual data set. Do not we need to convert *MYData to *the dissimilarity matrix using *pam(as.dist(**MYData**), k = 10, diss = TRUE*)* code line?* *Regards.* On Thu, Aug 17, 2017 at 2:58 PM, Germano Rossi <germano.rossi at gmail.com> wrote: > try this > > MYdata <-

Sorry, I never use pam. In the help, you can see that pam require a dataframe OR a dissimilarity matrix. If diss=FALSE then "euclidean" was use.So, I interpret that a matrix of dissimilarity is generated automatically. Problems may be in your data. Indeed pam(ruspini, 4)$diss write a dissimilaty matrix while pam(MYdata,10)$diss wite NULL 2017-08-17 16:03 GMT+02:00 Sema Atasever

try this MYdata <- read.csv2("data.txt",dec='.') library(cluster) cluster.pam = pam(MYdata,10) table(cluster.pam$clustering) filenameclu = paste("clusters", ".txt") write.table(cluster.pam$clustering, file=filenameclu,sep=",") 2017-08-17 10:28 GMT+02:00 Sema Atasever <s.atasever at gmail.com>: > Dear Authorized Sir / Madam, > >

Dear all, I'm trying to manage with user defined split function in rpart (file rpart\tests\usersplits.R in http://cran.r-project.org/src/contrib/rpart_3.1-34.tar.gz - see bottom of the email). Suppose to have the following data.frame (note that x's values are already sorted) > D y x 1 7 0.428 2 3 0.876 3 1 1.467 4 6 1.492 5 3 1.703 6 4 2.406 7 8 2.628 8 6 2.879 9 5 3.025 10 3 3.494

Dear Authorized Sir / Madam, I have an R script file in which it includes PAM Clustering codes: *when i ran R script i am getting this error:* *Error in pam(d, 10) : x is not a numeric dataframe or matrix.* *Execution halted* How can i fix this error? Thanks in advance. ? data.csv <https://drive.google.com/file/d/0B4rY6f4kvHeCcVpLRTQ5VDhDNUk/view?usp=drive_web> ? *pam.R* data <-

Hi everybody, I'm trying to use cross-validation (cv.glm) for count data. Does someone know which is the appropriate cost function for Poisson distribution? Thank you in advance. Valerio. Conservation Biology Unit Department of Environmental and Territory Sciences University of Milano-Bicocca Piazza della Scienza,1 20126 Milano, Italy.

Someone knows the existence of a function to sum the elements of the same place A[i,j] B[i,j] of a matrix?thank you -- Dr. Daniele Riggi, PhD student University of Milano-Bicocca Department of Statistics Building U7, Via Bicocca degli Arcimboldi, 8 20126 Milano, Italy cell. +39 328 3380690 mailto: daniele.riggi@gmail.com [[alternative HTML version deleted]]

Dear R-users, I'm working with the Rpart package and trying to understand how the procedure select the best split in the case the method "class" and the splitting index "Gini" are used. In particular I'd like to have look to the source code that works out the best split for un unordered predictor. Does anyone can suggest me which functions in the sources I should

Hi, I would like to know if it is possible to have a "R code" to estimate the parameters of a mixture of bivariate (or multivariate) normals via EM Algorithm. I tried to write it, but in the estimation of the matrix of variance and covariance, i have some problems. I generate two bidimensional vectors both from different distribution with their own vector means and variance and

Hi R-users,I'm trying to solve a non linear equation, to find the degrees of freedom of a mixture of t student. I'm sure i wrote the minimization equation in the right way, but when i try to run the EM algorithm to estimate the parameters of the mixture, the following error will appear: Error in uniroot(function(z) log(z/2) - digamma(z/2) + 1 - log((z + d)/2) + : f() values at end

Hello list, the following approach did not work: clustersA <- pam(distances, nkA, diss=TRUE); gc(); filenameclu = paste("filenameclu", ".txt"); write.table(clustersA , file=filenameclu,sep=","); although it worked with clustersA <- hclust(distances, method="ward"); and a consecutive kclassA <- cutree(clustersA, k=nkA); filename =

https://bugs.freedesktop.org/show_bug.cgi?id=92192 Bug ID: 92192 Summary: nouveau does not detect monitor native resolution Product: xorg Version: unspecified Hardware: Other OS: All Status: NEW Severity: normal Priority: medium Component: Driver/nouveau Assignee: nouveau at

Dear Gregory R. Warnes, I'm a phd student in statistics, at the University of Milano Bicocca. I'm interested to the methods of estimate the parameters of the Dirichlet distribution. Do you have implemented an algorithm in R? If so, can you give me the script? or, in general, some helps? Best Regards Gianna --------------------------------------------------------------- Gianna Monti

https://bugs.freedesktop.org/show_bug.cgi?id=84741 Bug ID: 84741 Summary: (EE) [drm] KMS not enabled Product: xorg Version: unspecified Hardware: Other OS: Linux (All) Status: NEW Severity: normal Priority: medium Component: Driver/nouveau Assignee: nouveau at

Dear R-listers, I would like to carry out a very basic descriptive analysis of homicides rates in Italy, taking into account both the spatial dimension (103 provinces) and the temporal dimension (10 years), but no covariates. In practice, what I would like to do is to describe spatio-temporal variation of homicide rates, identifying those combinations of province-year where the homicide rate

Dear R users, I am in trouble using the function solve(matrix) in a loop. When it happens that I have a singular matrix, I get an error message saying so and the loop stops. My question is if there in any way to keep on going in the loop. Thank you in advance, Laura *---------------------------------------------------------* Laura Antolini, PhD Department of

Hello... i''ve been read lots of posts talking about this kind o mess in IE... but no one tells how could this be possible to work... :-) Any suggestions?? thanks... <html> <head> <script src="prototype.js"></script> </head> <body> <table border=1> <tbody> <tr id="0" name="0"> <td>LINE

Hello everyone I am Germano, from Italy. Sorry to intruding, but I don't know who to ask anymore. I developed a small programming language, entirely written in Python. I state that I work under Windows, I'm using anaconda and Python 3.6. I wrote the lexical generator and the parser generator. Now I have to write a code generator and thought about using LLVM. It seems that the Uncio way to

I would be gratefulf if anybody can help me with this problem. I have not a experience with R language, actually this is my first job with it : I have write some instructions for acomplish a simulation, and I have 36 conditions with 1000 iterations each one . The program runs without problems, but in the 19 nth condition gives and error message (after running some iterations of this

Help, please. I need redirection to a custom error page, instead of the default Rails messages (e.g. Unknown action). I use WebRick, no Apache, and i think i can''t use public/.htaccess (# General Apache options). Thanks. ___________________________________ Nuovo Yahoo! Messenger: E'' molto più divertente: Audibles, Avatar, Webcam, Giochi, Rubrica… Scaricalo ora!