similar to: Timezone warnings on package install in R-alpha

Dear all, For an open-source project that I'm working on (1), which uses R for all its heavy lifting but includes a wrapper shell script, I was hoping to find a way to capture all warnings (and, in fact, errors too), and handle them in my own way. I realise I can do this for a single expression using something like: > f <- function(w) print(w$message) >

Dear all, In R-devel (2011-09-23 r57050), I'm running into a serious problem with seek()ing on connections opened with gzfile(). A warning is generated and the file position does not seek to the requested location. It doesn't seem to occur all the time - I tried to create a small example file to illustrate it, but the problem didn't occur. However, it can be seen with a file I use for

Dear all, Is there a way to force R CMD INSTALL to ignore ~/.Rprofile and similar? I presume it sources these startup files for a reason, but I've found that it can cause confusion or problems. In particular, my ~/.Rprofile loads a few packages which I very frequently use, but this stops me from installing new versions of their dependencies; viz. $ R CMD INSTALL tractor.base * installing to

Dear all, The version of readBin() in R-devel includes a use of match(), through `%in%`, which can affect its performance significantly. By using primitives instead of the rather expensive call to match(), I reduce the time spent inside readBin() by more than 30% in some of my code (part of the tractor.base package). A simple patch that does this is given below. This passes "make

I am having problems with RoundCube: 'Your session is invalid or expired' So I went looking for logs and in /var/log/roundcube/errors I find LOTS of warnings about problems with my timezone. Kind of a challenge to copy the log entries over here (will do if needed). Anyway, for right now I am looking as to where my 'Detroit American/New_York' (what I am seeing in Gnomes

Hi, I'm wondering what's the right value for specifying "America/New_York" time zone on a windows machine? I got my code which specify this time zone on as.POSIXct function work properly with this value on a linux machine. But it keeps giving me complaint on windows. Thank you. Cheers, Robert

Dear all, I have a simple front-end program which uses the APIs described in section 8 of "Writing R Extensions" to deviate from the standard R behaviour in fairly minor ways. However, I'm having some difficulty getting it to link reliably across different platforms. R CMD LINK seemed like it would help, but I've had difficulty finding many real-world examples online. I've

Dear R-devel, Can anyone help me to understand this? It seems that subscripting the rows of a data.frame without actually changing their order, somehow changes an internal representation of row.names that is revealed by e.g. dput/dump/serialize I have read the docs and inspected the (R) code for data.frame, rownames, row.names and dput without enlightenment. df=data.frame(a=1:10, b=1)

Dear all, I'm pleased to announce the release on CRAN of the "mmand" package (for Mathematical Morphology in Any Number of Dimensions). It provides functions for performing mathematical morphology (erode, dilate, etc.), smoothing, and other kernel-based operations on array-like objects of any dimensionality. The package is centred around a flexible function called morph(), which can

Dear all, I'm pleased to announce the release on CRAN of the "mmand" package (for Mathematical Morphology in Any Number of Dimensions). It provides functions for performing mathematical morphology (erode, dilate, etc.), smoothing, and other kernel-based operations on array-like objects of any dimensionality. The package is centred around a flexible function called morph(), which can

Hi, A piece of my code that uses readBin() to read a certain file type is behaving strangely with R 2.7.0. This seems to be because of a failure to match() strings after using rawToChar() when the original was terminated with a "\0" character. Direct equality testing with == still works as expected. I can reproduce this as follows: > x <- "foo" > y <-

Hi all, I am testing R 4.0 and ran into an issue with timezones on Ubuntu Focal: converting a timestamp to another timezone results in NA: as.POSIXct(as.POSIXlt(Sys.time(), tz = "CET"), tz = "EST") This only happens on Ubuntu Focal, it seems to work fine on Ubuntu Bionic. I am the standard ubuntu docker image icw/ r-base from Dirk's ppa:edd/r-4.0 on both systems. Am I

On 4/24/20 4:02 PM, Jeroen Ooms wrote: > Hi all, > > I am testing R 4.0 and ran into an issue with timezones on Ubuntu > Focal: converting a timestamp to another timezone results in NA: > > as.POSIXct(as.POSIXlt(Sys.time(), tz = "CET"), tz = "EST") > > This only happens on Ubuntu Focal, it seems to work fine on Ubuntu > Bionic. I am the standard

hey list! having a slightly odd time issue on one host... can I get some help with this? This is the current time from a working system: Sun Apr 17 00:28:18 EDT 2011 However from the problem system this is the time: Sat Apr 16 20:30:01 EDT 2011 I have set the time zone as such: lrwxrwxrwx 1 root root 23 Apr 16 19:41 /etc/localtime -> /usr/share/zoneinfo/EST But when I run ntpdate

Howdy- I recently upgraded to R 2.9.1 and did the updates for all of my packages. A few of them now *suggest* the TZ variable to be set, which I did: > Sys.getenv("TZ") TZ "" > Sys.setenv(TZ="America/New_York") > Sys.getenv("TZ") TZ "America/New_York" Next up: library(RODBC) library(quantmod) channel <-

Dear all, There have been some recent major updates to the TractoR and RNiftyReg packages, which are available for medical image analysis applications. If you use R for these purposes, I hope you will find the updates useful. RNiftyReg is an image registration package, which provides a clean R-like interface to the NiftyReg library developed at University College London [1]. It is aimed at

Dear all, There have been some recent major updates to the TractoR and RNiftyReg packages, which are available for medical image analysis applications. If you use R for these purposes, I hope you will find the updates useful. RNiftyReg is an image registration package, which provides a clean R-like interface to the NiftyReg library developed at University College London [1]. It is aimed at

Dear all, The "tractor.base" package has recently been added to CRAN. This package provides functions to read, write, visualise and manipulate magnetic resonance images. The standard Analyze, NIfTI and DICOM file formats are supported (read-only for DICOM), and all metadata is stored with the image data internally. The code can be used to visualise image slices or maximum intensity

Dear all, The "tractor.base" package has recently been added to CRAN. This package provides functions to read, write, visualise and manipulate magnetic resonance images. The standard Analyze, NIfTI and DICOM file formats are supported (read-only for DICOM), and all metadata is stored with the image data internally. The code can be used to visualise image slices or maximum intensity

Hi, The acrobatics that as.data.frame.factor() is going thru in order to recognize a direct call don't play nice if as.data.frame() is an S4 generic: ??? df <- as.data.frame(factor(11:12)) ??? suppressPackageStartupMessages(library(BiocGenerics)) ??? isGeneric("as.data.frame") ??? # [1] TRUE ??? df <- as.data.frame(factor(11:12)) ??? # Warning message: ??? # In