similar to: varpart

I'm trying to perform a RDA analysis in the vegan package using the "varpart" function. I have a matrix of community structure data in different sites (rows), which I want to explain using 3 matrices of environmental data. The 3 matrices are: water quality parameters; local land use variables; total land use variables. In each matrix, the number of the rows is the same (the

I am not familiar with the vegan package, so I am just making a guess here. If 'na.action=na.omit' is part of the call to varpart, try removing it from the function call and moving it above as follows: options(na.action="na.omit") RDA_Ger <- varpart(comm, x1, x2, x3, transfo="hellinger", scale = FALSE) Maybe that will help. Regards, Eric On Sat, Sep 16, 2017 at

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

Hi, I did a linear regression with 5 explanatory variables. Now, to see the contribution of each variable, I use varpart from vegan library. But varpart don?t accepts my 5 explanatory variables, it accept only 4. 1- How must I do to use my 5 explanatory variables? 2- Is it the sum of variance fraction of each variable must be equal to 1. Thanks for your help. Komine -- View this

The varpart function does not have na.action argument, and all undefined arguments are regarded as explanatory data sets X (they come after ?). Best wishes, Jari Oksnaen

Hi Lieven Thanks for advise ! the getent passwd command shows me all the users of the 2k domain in this format : DOMAIN2K+user:x:10000:10026::/home/NetBiosName/user:/bin/bash I think that's correct. But do you think I got to use nss pam or something like that ? I just can't login with a 2000 user on Samba, but guests (unknown users ) can, when I permit them to. So I think users are

Hello I am using Jari Oksanen's CCA routine from the Vegan package on some estuary data, following a technique applied in (Anderson, M.J. & Gribble, N.A., 1998, Partitioning the variation among spatial, temporal and environmental components in a multivariate data set, Australian Journal of Ecology 23, 158-167). Some steps in the process require that the dependent matrix be constrained by

Hi, I am trying to run the command "forward.sel.par," however I receive the error message: "Error: could not find function 'simpleRDA2'." I have the vegan library loaded. The documentation on "varpart" has not helped me to understand why I cannot call this function. Maybe I am missing something obvious because I am still an 'R' novice. Below is a

Hi, I am using venn diagram function in AMDA to plot the venn diagram. But it seems in this function, it can only plot 3 or less vectors. Is there a way to plot the venn diagram with more than 3 vectors? Please help. Thanks. Z --------------------------------- [[alternative HTML version deleted]]

Hi, Can anybody confirm the following problem: Sequence: bash-2.05# grep ankerpos /usr/samba.moonrock/private/smbpasswd ankerpos:921:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX:[U ]:LCT-0 bash-2.05# /usr/samba.moonrock/bin/smbpasswd -c /usr/samba.moonrock/lib/smb.conf ankerpos New SMB password: Retype new SMB password: bash-2.05# grep ankerpos

Hello, I am a total beginner with ?R? and found a package ?venn? to create a venn diagram. The problem is, I cannot create the vectors required for the diagram. The manual say: "R> venn(accession, libname, main = "All samples") where accession was a vector containing the codes identifying the RNA sequences, and libname was a vector containing the codes identifying the

Hello, This morning I downloaded, unzipped, and compiled the latest version of R for unix, in my HOME/APPLICATIONS directory. My current unix machine is a sparc-sun-solaris2.9, running SunOS 5.9. Here are the last few lines of the output following ./configure: R is now configured for sparc-sun-solaris2.9 Source directory: . Installation directory: /usr/local C compiler:

Hi I've a problem with the following example: library(tcltk) .Tcl("array unset tclArray") myRarray <- matrix(1:1000, ncol=20) for (i in (0:49)) for (j in (0:19)) .Tcl(paste("set tclArray(",i,",",j,") ",myRarray[i+1,j+1],sep="")) tt<-tktoplevel() table1 <- tkwidget(tt,"table",variable="tclArray",

Hi everyone, I have a problem on samba running on RHEL 3 kernel 2.4.21 with RHEL 3 samba packages - samba-3.0.7-1.3E.1. The problem is, that when people open excel files (with office 97 version of excel) the file modification time is changed (even if the file is only opened and excel closed without saving). This same problem does not occur on the [homes] share (in every test untill now it never

Hi all, I use "doveadm mailbox mutf7 -7 $folder" to convert imap foldernames to UTF-8. If $foldername is not mUTF-7 encoded, doveadm returns "doveadm(root): Error: Mailbox name not valid mUTF-7: $folder" This errormessage is printed on stderr but the returncode of doveadm is zero. I tested with dovecot-2.0.* and dovecot-2.1.* # all right: $ doveadm mailbox mutf7 -7

Hi all, I'm just starting to play with 1.4. I installed 1.4.1 on an Ia32 machine, and can't find any problems. So, I decided to upgrade my home pbx. All went well until I tried using my S101 to talk to the IVR. Some times, the first one or two digits get through, but eventually a digit will get stuck, playing continuously until the call is terminated. I have confirmed this

Hey, is http://www.dovecot.org/patches/1.0/quota.tar.gz supposed to work with maildir quota's for virtual mailboxes? Using it with dovecot-lda (cvs) results in DSN Your message was automatically rejected by Sieve, a mail filtering language. The following reason was given: Internal quota calculation error Thanks, Lieven -------------- next part -------------- A non-text attachment was

The submission deadline for `useR! 2006', the second R user conference to be held in Vienna June 15-17 2006, is only four weeks ahead. Now is the perfect time to submit abstracts for user-contributed sessions! The sessions will be a platform to bring together R users, contributers, package maintainers and developers in the S spirit that `users are developers'. People from different fields

The submission deadline for `useR! 2006', the second R user conference to be held in Vienna June 15-17 2006, is only four weeks ahead. Now is the perfect time to submit abstracts for user-contributed sessions! The sessions will be a platform to bring together R users, contributers, package maintainers and developers in the S spirit that `users are developers'. People from different fields

Dear useRs, The submission deadline for `useR! 2006', the second R user conference to be held in Vienna June 15-17 2006, is only five days ahead. So this weekend is the perfect time to submit abstracts for user-contributed sessions! The sessions will be a platform to bring together R users, contributers, package maintainers and developers in the S spirit that `users are developers'.