similar to: R-devel Digest, Vol 126, Issue 18

Dear list, I have tried to compile and install the development version of R, but met some problems I'm not quite sure how to resolve. I have downloaded the code from your repository, configured, and tried to compile using the makefile, as follows: [atxi@aquario R]$ svn co http://svn.r-project.org/R/trunk [atxi@aquario R]$ cd trunk [atxi@aquario R]$ ./tools/rsync-recommended [atxi@aquario

Hello, I am trying to upgrade to the latest R release on a machine running Red Hat el5.? Previously I was successful at building R 2.11, but now I am having troubles with R 2.14. Configure goes fine, but then make throws a lot of errors (output below).? Any idea what I am doing wrong this time around? Thanks in advance, Erik make output: ... gcc -std=gnu99 -I../../src/extra/zlib

About April 25th, there had been some changes within R-devel's src/nmath/pnbeta.c (and probably some other relevant places) and now building R-devel on FreeBSD 10.0-CURRENT (amd64) with gcc-4.6.4 and math/R-devel (selfmade forked port from math/R) fails like this: [..snip..] mkdir /usr/ports/math/R-devel/work/R-devel/bin/exec gcc46 -std=gnu99 -I../../src/extra -I. -I../../src/include

On an azure centos VM, I can reproduce this bug which reports either: *** caught segfault *** address 0x70000006a, cause 'memory not mapped' (crash) Or incompatible types (from builtin to integer) in subassignment type fix (no crash) Like Gabriel, I could not reproduce the bug on a mac laptop. Both R versions 3.5.1. Travers On Wed, Feb 27, 2019 at 9:08 AM William Dunlap via R-devel

Valgrind (without gctorture) reports memory misuse: % R --debugger=valgrind --debugger-args="--leak-check=full --num-callers=18" ... > x <- 1:200000 > y <- rep(letters[1:5], length(x) / 5L) > for (i in 1:1000) { + # x[y == 'a'] <- x[y == 'b'] + x <- `[<-`(x, y == 'a', x[y == 'b']) + cat(i, '') + } 1 2 3 4 5 6 7 8 9 10

The following odd call to rep() gives somewhat random results: > rep(1:4, 1:8, each=2) [1] 1 1 1 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 4 4 4 4 [26] 4 4 4 4 4 4 4 4 4 4 4 NA NA NA NA NA NA NA NA NA NA NA NA NA NA [51] NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA > rep(1:4, 1:8, each=2) Error: only 0's may be mixed with negative

Thanks again, sorry I didn't specify this. I am loading new libraries to get to this point. The script I run for "configure" is: #Load the new curl module module load libs/gcc/4.4.7/curl/7.47.1 #Load the new xzutils module module load apps/gcc/4.4.7/xzutils/5.2.2 #Load the new zlib module module load libs/gcc/4.4.7/zlib/1.2.8 #Load the new bzip2 module module load

Dear All, I am trying to compile R-3.0 on Cray xe6 (HLRS) HERMIT, no success so far. Here is my experience: I use this to configure and make R: CC="cc" \ CXX="CC" \ F77="ftn" \ FC="ftn" \ CPPFLAGS="-I$PREFIX/include" \ LDFLAGS="-L$PREFIX/lib${LIBDIRSUFFIX}" \ ./configure --prefix=$PREFIX \ --exec-prefix=$PREFIX \ --bindir=$PREFIX/bin \

Using AIX 5.3 and gcc-4.2.1 for building R-2.7.1 with the following configure flags OBJECT_MODE=64 CC="gcc -maix64" CXX="g++ -maix64" F77="gfortran -maix64" FC="gfortran -maix64" CFLAGS="-g -O3" CXXFLAGS="-g -O3" FFLAGS="-g -O3" FCFLAGS="-g -O3" LDFLAGS="-L/$HOME/usr/local/lib/ppc64

Dear R-list, Realising the importance of updating the R base, I tried to compile the source file of R2.2.1 in my machine, but failed. According to "R for Mac OS X FAQ", i've got the basic dependencies which are gcc 3.3 and g77 3.4. ./configure is fine Here are the errors I got from make: >make ... gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre

Trying to build a Debian snapshot of R-alpha based on last night's tarball, it fails with what looks like a missing -lm linking directive: [...] gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c version.c -o version.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c vfonts.c -o vfonts.o g77 -fpic -O2 -c xxxpr.f -o

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

Dear all: I have a problem with calling R from Java, It was ok at the first time,but the error message "An unexpected exception has been detected in native code outside the VM. " will appear. What is the issue of "native code"? Could somebody help me ? Thanks, ken This is the log I obtained: executing: source('/export/home/users/ruser/java/Rmain.R') Loading

> On 18 May 2016, at 18:54 , Martin Maechler <maechler at stat.math.ethz.ch> wrote: > > >> Yes, the nightly build is broken in a similar, but different way. See below. >> Both seem to be readline related, so Frederick Eaton's patches, which Martin committed yesterday are the likely culprit. I had actually tested them and things seemed to work, but it was on a

Hi. It seems that if I put a browser() in my Rprofile.site, I get a segfault. This happens on several machines, several versions of R. Here it the valgrind output when using revision 62797: ==31314== Memcheck, a memory error detector ==31314== Copyright (C) 2002-2012, and GNU GPL'd, by Julian Seward et al. ==31314== Using Valgrind-3.8.1 and LibVEX; rerun with -h for copyright info ==31314==

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

I am trying to compile R-2.4.1 in 64-bit on Solaris 10 running on AMD hardware. I am trying to do this with Sun Studio 11. My config.site looks like this: #! /bin/sh AR="/usr/ccs/bin/ar" TEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/tex" LATEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/latex" PDFTEX="/usr/local/teTeX/bin/i386-pc-solaris2.10/pdftex"

Hello R Help, I am attempting to install/build a 64-bit version of R to hopefully resolve some memory.limit problems for a user who is running a simulation. The 'configure' runs fine and the compilation (make) runs fine until the very last part (see below). I have libiconv in /usr/local/lib (no sure why I am getting the referencing error). The config.site file is attached. ANY HELP YOU

We have a solaris/sparc machine that has been running an old version of R-devel: Version 2.2.0 Under development (unstable) (2005-06-04 r34577) which was built as m64 from sources. Attempting to upgrade to 2.4.0 the configure step goes ok, but I'm getting early on from make: > gcc -m64 -L/opt/sfw/lib/sparcv9 -L/usr/lib/sparcv9 > -L/usr/openwin/lib/sparcv9 -L/usr/local/lib -o