similar to: stock ubuntu raring binary R 3.0.1 and accelerated blas libraries?

Dear All, I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same

I run Fedora 22 R package. It is build with --with-lapack \ --with-blas \ --enable-R-shlib \. As the machine will act as a server with lots of R data computing, I try to optimize my R package. At first, I installed parallel_studio_xe_2016 with a free one year licence. Then, I build a package for R with Intel MKL and compiler. This took me lots of time as it was my first .rmp build. I finally

Hi, I'm relatively new to R on Ubuntu (moving from Windows), and I'm trying to get GotoBLAS2 working. I installed (from a CRAN mirror) the pre-built binaries of R (which, as far as I know, is compiled as a shared library) on Ubuntu 10.10 using apt-get install r-base r-base-dev I successfully built GotoBLAS2 from source, copied the library to /usr/lib and created s symbolic link from

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

Hello!, this is my first post, I am a beginner user of ubuntu linux. I have a problem installing packages from CRAN repositories, I mean using the command install.packages(). I followed the instructions from this site http://cran.r-project.org/index.html. I know that I need the ubuntu package r-base-dev to install packages with that command. I run in a terminal the following commands:

Hola Tengo el siguiente problema: Estoy trabajando con una serie de tiempo que contiene 48 datos, en el intervalo entre un dato y otro es de 30 minutos. ¿Como puedo hacer para que cada dato de la serie me lo reconozca en hora y minuto?. Saludos El 23 de septiembre de 2012 12:17, <r-help-es-request@r-project.org>escribió: > Envíe los mensajes para la lista R-help-es a >

Hola. Tengo un problema con la instalación de paquetes en R. Por ejemplo, al intentar instalar el paquete "psych" o "abind" obtengo lo siguiente como resultado (ya sea que lo haga descargado el paquete, o ya solicitando que lo haga desde la red). Utilizo R 2.15.1 en Ubuntu 11.10 y apenas estoy iniciando en R. Necesito ayuda para resover estos problemas, pues necesito sobre todo

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure

On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):

Hi I just read the thread on gotoBLAS, as well as the excellent vignette of gcbd. I still have some confusion and would like to ask very basic questions, hope I am not taking too much of your time. The point that retained my attention was the question of using implicit (multi-threaded blas) versus explicit (parallel code) optimisation. As I understood, the ideal would be to use a

I am unable to install R on an up to date (i.e. apt upgraded) Ubuntu 14.04 system. According to https://cran.r-project.org/bin/linux/ubuntu/README (and many other sources), R is available for this version of Ubuntu (which is a stable version). I currently have deb https://cran.cnr.berkeley.edu/bin/linux/ubuntu trusty/ in sources.list. I've tried this with and without deb

Dear R-SIG-Debian, I am using R version 3.1.2 with rstudio-server 0.98.113 on debian build 3.2.0-4-amd64 #1 SMP Debian 3.2.68-1+deb7u1 x86_64 GNU/Linux. I often use the %dopar% operator in from the foreach package to run code in parallel. However, the only other use on the box seemingly installed a few items and suddenly %dopar% will use far more than the number of cores I am specifying and

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb

Hi, i'd like to install R 2.5 on an Ubuntu 14.04. I have a special software requiring this old version. While ./configure, i get the following error: checking for mbstate_t... yes checking for X... no configure: error: --with-x=yes (default) and X11 headers/libs are not available The problem is that i don't know which headers or libraries are missing, and when i search with aptitude in

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

I can make a few suggestions to help you hunt for the issue. This kind of error is often caused by conflicting packages from proposed, backports, ppas, or other 3rd party repos. If for some reason you have a dependency installed from one of those sources that is newer than what R on cran was built against (stock ubuntu 14.04) then you will hit a conflict. Simply removing backports from your repos

Hello, After upgrading to 2.7.2 this morning via the cran repository, I get the following error when calling R via the command line: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to

Possibly off the wall and a long shot, but is pre-installed Linux perhaps 32 bit, while the R attempt is 64? JN On 16-03-23 02:22 PM, Barnet Wagman wrote: > Synaptic can show the origin of packages. > > The only thing I see from a backport is > > libcmanager0 > > I don't think this is relevant to R. Or is it. > > The only thing I've got installed from

Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object