similar to: SVMREF infinte number of genes

I have been trying to track down a problem that occurs when my GPLPV drivers give Windows a packet with the NdisPacketTcpChecksumSucceeded flag set. The problem is that the machine locks hard. After some tedious work with the debugger, I have found that Windows makes a call to a routine called RtlPrefetchMemoryNonTemporal, which looks like this: 8088e579 mov eax,dword ptr

Say I train a model in caret, e.g.: RFmodel <- train(X,Y,method='rf',trControl=myCtrl,tuneLength=1) How can I save this to disk and load it later in R? How about an object of the class "resamples"? resamps <- resamples( list( RF = RFmodel, SVM = SVMmodel, KNN = KNNmodel, NN = NNmodel )) Thanks,

Hi users I'm student who is struggling with basic R programming. Would you please help me with this problem. "My english is bad" I hope that my question is clear: I have a matrix in wich there are two colmns( yp, yt) Yp: predicted values from my model. yt: true values ( my dependante variable y is a categorical;3 modalities (0,1,2) I don't know how to procede to calculate the

Hi guys, I have two data frames: one referred to 2008 and one to 2009. Their structure is identical except for the different data in them. I need to create a vector alfa of the same length of the dataframe 2009 and fill each element with the mean of 2008$var1 conditional to the subgroup indicated by a factor variable in 2009$var2. In this case it would be easy to use the function

Hello, i know that the result is infinte, but there are sill flags in the FPU which indicate that an overflow, underflow or div by zero occured. So isn't there an easy way to check if one of those flags is set? 2010/7/23 John McCall <rjmccall at apple.com> > On Jul 23, 2010, at 7:20 AM, Steffen Geißinger wrote: > > i need to check if an overflow of an floating-point

On Jul 23, 2010, at 7:20 AM, Steffen Geißinger wrote: > i need to check if an overflow of an floating-point arithmetic operation occured. > Currently I'm doing something like this (for addition): > > (LHS > 0 && RHS > 0 && sum <= 0) || (LHS < 0 && RHS < 0 && sum >= 0) IEEE floating-point doesn't overflow like this; if the

Dear Colleagues, We are attempting to create trees using R with our Ruby on Rails application. However, we are running into a problem involving the creation of the graphic. We would like them to be in either jpg or png format so that users can save, but due to a lack of control over our sever we are unable to start X11 server. Is there a way to create these images without using X11 server?

rsync-request@lists.samba.org escribi?: > Send rsync mailing list submissions to > rsync@lists.samba.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.samba.org/mailman/listinfo/rsync > or, via email, send a message with subject or body 'help' to > rsync-request@lists.samba.org > > You can reach the person managing the list at

If you're able to reproduce the infinite loop with -O3 then you should be able to dump out the IR that causes `opt -instcombine` to infloop, unless the bug is truly esoteric (e.g. only caused by a specific use-list ordering). Maybe take a closer look at the output from `opt -print-before-all -O3`? Alternatively you can use bugpoint to minimize the IR to get a small reproducer that causes

Hi, i need to check if an overflow of an floating-point arithmetic operation occured. Currently I'm doing something like this (for addition): (LHS > 0 && RHS > 0 && sum <= 0) || (LHS < 0 && RHS < 0 && sum >= 0) This is checked for every addition. Is there a more efficient way like the intrisic for int overflow? How is it possible to raise a

I''ve configured actionmailer following the documentation, adding to environment.rb everything for using my mail account on yahoo using deliver_* methods to send a mail. I can see the mail in development.log and everything seems fine, but no mails so far. Is there a place where can I see what the server answered, or something to look at to solve the problem ? I have no clue,

Dear all,    I am having a recurring problem when I attempt to conduct a GLM.  Here is what I am attempting (with fake data): First, I created a txt file, changed the directory in R (to the proper folder containing the file) and loaded the file: #avoid<-read.table("avoid.txt",header=TRUE);avoid #  treatment feeding avoid noavoid #1   control  nofeed     1     357 #2  

I'm doing prediction of the survival cases using gene expression profiles(Affymetrix chips). Can somebody tell me how to use the Cox PH model to select genes and make a prediction of survival? Thanks. Guangchun

The following patches were made over Linus's tree and fix an issue where windows guests will send iovecs with offset/lengths that result in IOs that are not aligned to 512. The LIO layer will then send them to Linux's FS/block layer but it requires 512 byte alignment, so depending on the FS/block driver being used we will get IO errors or hung IO. The following patches have vhost-scsi

Hi, recently, I got a bunch of DNA sequences (with chromosome coordinate for each sequence), I would like to know the relative distance between these sequences and all the genes (genomic sequences) on human genome, i.e., are these sequences locate at upstream of the genes(5 prime end), downstream of the genes(3 prime end) or within the genes. I have about 8000 sequences. Any package, methods

Hi, I have a number of genes (columns) for which I want to examine pairwise associations of genotypes (each row is an individual)...For example (see data below), I would like to compare M1 to M2, M2 to M3, and M1 to M3 (i.e. does ac from M1 tend to be found with bc from M2 more often than expected.) Down stream I will be performing chi square tests for each pair. But I am looking for a way to

Hi: I'm clustering a microarray dataset with a large # of samples. I would like your opinion on the best way to automatically determine the optimal # of clusters. Currently I am using the "cluster" package, clustering with "clara", examining the average silhouette width at various numbers of clusters. I'd like opinions on whether any newer packages offer

Dear All: I have a question on using coxph for multiple genes: I have written code to loop through all 22283 genes in the Hgu-133A and apply coxph on survival data. However, I don't know how to work with the result for each gene: survtest<-coxph(Surv(pcc.primary.stg.3.cox[,'fup_interval'],pcc.primary.stg.

Hi, all, Anyone has experience on Logistf package? I am using logistftest in Logistf package to selelct diagnosis genes. The result seems not the same as I expected. I have 10 gene expression data for 27 tumor 1 and 11 tumor 0. I want to select the best one using Maximum likelihood ratio test in logistic regression model. This is the way my code works: 1. Read in 10 genes as independent

Hi Everyone, I am trying to find a way to do this in excel to tell me which genes are the most differentially expressed. Sorry, i couldn't find excel forum section in nabble. However, if it is in R it is fine. This is a microarray data, and it has been normalized. According to Dov Stekel in Microarray, i will need to calculate log ratio (control-treatment). Once you have the log ratio,