similar to: Problem in linking a library in R package

1.I have a library fpmpi . I made the shared library fpmpi.so from this library.I am using ubuntu . 2.Now, I want to use in my R package .My R package has src folder the there is makevars.in file ### Setup R source code and objects. PKG_CPPFLAGS = @PKG_CPPFLAGS@ PKG_LIBS = -L/home/g/Desktop/Project -fpmpip ### For user configuration. USER_CONF = Makeconf ### Start making here. all:

R-Project is missing something important in regards to its development , one simply can't ignore Github ,where collaboration is at it's best . OR If i am wrong is this the correct R-source : https://github.com/wch/r-source Is anyone thinking to bring R-project org on Github ? Maybe there might be some difficulty while porting its version system to Github . Just a suggestion . Thanks

Hi, A package with some C code needs to use the headers and shared library in another package during installation/compilation. The first one is achieved through the LinkingTo option in DESCRIPTION. For the second a Makevars file with PKG_LIBS=$(R_HOME)/library/firstPkg/libs/firstPkg.so was being used. Problem this is not portable if the firstPkg package is not installed in the library folder

Hi, Recently, I made an R package that used the C++ library Boost.Thread (http://www.boost.org/doc/libs/1_54_0/doc/html/thread.html) for multithreading. Previously, I have posted a question at stackoverflow (http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-http), and I also asked at rcpp-devel

Hello! I have some Fortran code that uses BLAS calls, and would like to compile it into a shared object to call it from R as per the "Writing R Extensions" manual. What needs to go into the "Makevars" file, so that running the R CMD SHLIB will work in Ubuntu? The code compiles properly on the Mac, with the Makevars line PKG_CFLAGS=-Wl,-framework -Wl,vecLib but of course

I have a package on CRAN now (corpus-0.3.1) that is currently failing tests on Linux, but passing on all other architectures: https://cran.r-project.org/web/checks/check_results_corpus.html I believe that the issue arrises from a namespace class between "xrealloc", which my package provides for internal use, but which R also seems to provide (possibly as part of TRE in

Hi Everyone, I'm trying to load some C++ code using dyn.load but I'm getting unresolved symbols associated with some external libraries (CSparse). I gather this is something to do with linking as the the code compiles fine. However, I've passed -L/home/jarrod/My_Programs/SuiteSparse/CSparse/Lib -lcsparse to the complier (g++), either directly using R CMD SHLIB or as

Dear R-developers, Bioc-developers, I am working on an R package which provides a R binding to a C library, which again depends on two other "non-standard" C++ libraries. I have this libraries installed on my box of course and I specified the library location in the Makevars file. However I thinking about to make the package available to other users and wonder a) Where I should

Hi all, I have a C function, say Cfun, that calls Lapack's DGEMM routine and I need to create a shared library to use Cfun inside R. The C file is the following #include<stdio.h> #include<R.h> #include<R_ext/Lapack.h> void Cfun(double *res, double *X, int *n, int *q) { char *ptr_TRANSA, TRANSA='T', *ptr_TRANSB, TRANSB='N'; ptr_TRANSA=&TRANSA;

Le 27/09/16 ? 13:31, Dirk Eddelbuettel a ?crit : > > On 27 September 2016 at 09:37, Eric Deveaud wrote: > | Hello, > | > | I'm tring to install a Rpackage that holds some C//C++ code > | > | as far as I understood the R library generic compilation mechanism, > | compilation of C//C++ sources is controled > | > | 1) at system level by the ocntentos

Hi, I've got a C extension structured roughly like: package/ src/ Makevars foo.c some-lib/... some-other-lib/.. where foo.c and Makevars define dependencies on some-lib and some-other-lib. Currently I'm having Makevars configure;make install some-lib and some-other-lib into a local build directory, which produces shard libraries that ultimately I reference for foo.o in

I am just trying to adjust one of my packages so the C code builds in Windows. This is code that has been around for a long time, and I'm am only a casual reader of C, so it has had the "if it is not broken don't touch it" approach for many years. The section 1.2.1 "Using Makevars" of "Writing R extensions" starts: "Sometimes writing your own

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c

Hello, I'm tring to install a Rpackage that holds some C//C++ code as far as I understood the R library generic compilation mechanism, compilation of C//C++ sources is controled 1) at system level by the ocntentos RHOME/etc/Makeconf 2) at user level by the content of ~/.R/Makevars 3) at package level by the content of src/Makevars Problem I have is that src/Makevars is ignored see

Hi all, I'm a summer University research student and I've been wroking on writing a package, Rsoam, to integrate R with Platform's symphony software to allow for distributed computing. When I "R CMD check" the package, I get the following error when trying to load the Rsoam.so after building Rsoam.cpp: * checking whether the package can be loaded ... ERROR Loading

Hi, I am a student at IIT Kanpur. I am working on Path Profiling, i just came with a need to know about the number of static paths in a program(actually in a function) before it's actually get run. As i saw in PathProfiling.c file in llvm\runtime\libprofile they are just storing the path information at run time and dynamically adding entries for the new path. But i need to know the number of

One other solution that's only a little crazy: you could have a R function within your package that generates the appropriate (portable) Makevars, and within the package `configure` script call that function. For example" R --vanilla --slave -e "source('R/makevars.R'); makevars()" And that 'makevars()' function could generate portable

On 11 May 2017 at 12:16, Patrick Perry wrote: | I've done a bit more investigation into this issue. Here is my current | understanding of the situation: | | 1. I have a package on CRAN (corpus-0.3.1) that passes tests on all | platforms except for Linux. | 2. My package defines a C function, "xrealloc", for internal use. | 3. The libreadline library that R links to defines a

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

On May 13, 2015, at 2:28 PM, Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: > While at it: 'Makevars' is an R invention (i.e. documentation of it > is only available through the R docs), correct? /Henrik > Well, it's just a Makefile fragment that gets included along with the rest of the Makefiles, so for all practical purposes it's just a Makefile which