similar to: fitting grid-based models

Dear useRs, I have written an ecological model, based on the epidemiology SIR model. I've been trying to simulate it in R. However, I can't simulate it properly. Two guesses: my script isn't right; I'm not setting the parameters properly I have uploaded an image to the model here: http://img24.imageshack.us/img24/743/imagemutr.jpg The script I am using is as it follows:

Dear useRs, a new and completely re-worked version of the "simecol" package SIMulatiion of ECOLogical (and other) dynamic systems is now available on CRAN. Compared to the S3 based 0.2-x versions an improved object model using S4 classes was employed. Please ask me for assistance in case of incompatibility. Comments are welcome, Thomas Petzoldt

Dear useRs, a new and completely re-worked version of the "simecol" package SIMulatiion of ECOLogical (and other) dynamic systems is now available on CRAN. Compared to the S3 based 0.2-x versions an improved object model using S4 classes was employed. Please ask me for assistance in case of incompatibility. Comments are welcome, Thomas Petzoldt

Hi there, I´m trying to use "simecol" package but I got the error showed below. I´m runnig R version 2.4.0 (2006-10-03). Kind regards, miltinho Brazil --- > require(simecol) Loading required package: simecol Error in loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = keep.source) : in 'simecol' methods specified for export, but

* Apologies for multiple posting * I attached to my previous e-mail a .r file, and it was not permitted by the rules of the mailing lis. Again, please receive my sincere apologies for this. I re-send again the e-mail with .txt attachemnt in the hope someone an help me to solve my problem. I'm trying to fit a set an ODE to an experimental time series. In the attachment you find the R code I

Questions about the port of Xen to ARM with virt extensions are best posted to xen-devel, the xen-arm list focuses on the PV port. Adding xen-devel since it seems you are mainly asking about the w/-virt-extensions port. On Fri, 2012-05-18 at 12:38 +0100, Krishna Pavan wrote: > Please inform the status of Xen-ARM for Cortex-A8 CPU''s on FME from > ARM. AFAIK no one has tried the

Hola a tod en s, estoy trabajando con modelos de regresión mixta con el paquete "nlme", concretamente con la función "lme". Una vez que hago mi modelo y el summary del mismo obtengo por ejemplo la significación (valor p) de la variable independiente, así como el valor del AIC para comparar mi modelo con otro similar, pero no sé cómo obtener un valor del grado de ajuste de la

I am attempting to calibrate a forest growth model using FME. I have several spatially separate plots with time series growth data for each(eg, height, basal area, etc.). Thus 2 independent variables: time and plot. Is there a way that I can calculate a model cost that takes into account these different plots? I notice in the documentation for the modCost function that there is a note

Dear All,   please help with some thoughts on overcoming the following issues, if possible:   #R Code   require(deSolve) require(FME) pars <- list(k = 0.06,v=18) intimes <- c(0,0.5,12,12.5,50) input   <- c(800,0,800,0,0) forc <- approxfun(intimes, input, method="constant") model <- function(pars, times=seq(0, 50, by = 1)) {   derivs <- function(t, state, pars) {     

Author: jrutt Repository: /hg/zfs-crypto/gate Revision: 41d7d68d4ab013616c499ed0e497bffb54c8cc73 Log message: 6232309 need configurable limit on number of open FMEs Files: update: usr/src/cmd/fm/modules/common/eversholt/eft.c update: usr/src/cmd/fm/modules/common/eversholt/eft.conf update: usr/src/cmd/fm/modules/common/eversholt/fme.c update: usr/src/cmd/fm/modules/common/eversholt/fme.h

Hello, I would like to use modFit and modCost from the package FME to find the optimal initial time t0 of a process. For simplicity, the process is either "off" (value 0) or "on" (value h). So I have a data vector with some zeros followed by some h's, e.g. > c(0,0,0,2,2,2,2,2,2,2) [1] 0 0 0 2 2 2 2 2 2 2 (hence h=2 here). I want to find the best guess for the initial

Dear R users, I'm trying to fit a set an ODE to an experimental time series. In the attachment you find the R code I wrote using modFit and modCost of FME package and the file of the time series. When I run summary(Fit) I obtain this error message, and the values of the parameters are equal to the initial guesses I gave to them. The problem is not due to the fact that I have only one

Hi guys, I am trying to replace all elements of earth that are equal to zero with their corresponding elements in mars. I can do the replace with a bunch of for-loops, but I don't think this is the R way of doing things. my_list <- list( earth=array(c(0,0,45,0,0,45,0,45),dim=c(2,2,2)), mars=array(c(8:1),dim=c(2,2,2))) my_list for (i in c(1:2)) { for (j in c(1:2)) {

hi I am a student in FME in Greece and with my friends, we try to make a project in computer lesson. We try to make a grid with some Pentium III and we use Knoppix Cluster. But we have a surius problem.We can not make the other pc to boot over the network because the bios of the pc do not support the network boot order.So we thought to make some boot loaders but the think is that we dont know

Dear all, I used modFit of the package FME to fit a set of ODE to a ste of eperiemntal data. The summary of this fit give me the following error > summary(Fit) Residual standard error: 984.1 on 452 degrees of freedom Error in cov2cor(x$cov.unscaled) : 'V' is not a square numeric matrix In addition: Warning message: In summary.modFit(Fit) : Cannot estimate covariance; system is

Dear R developers, I recently observed a NOTE on several MaxOS X package checks: sh: line 1: gs: command not found !!! Error: Closing Ghostscript (exit status: 127)! /usr/bin/texi2dvi: thumbpdf exited with bad status, quitting. See for details: http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/simecol-00check.html or

Hello, I am currently not able to instal mongrel, I run a Linux Ubuntu 10.04 system with Gems 1.3.7 when I do a "sudo gem install mongrel" I get this sequence of messages: $ sudo gem install mongrel Building native extensions. This could take a while... ERROR: Error installing mongrel: ERROR: Failed to build gem native extension. /usr/local/bin/ruby extconf.rb checking for main() in

We've added a column at http://cran.r-project.org/web/checks/check_summary.html of test results using the Sun Studio compiler: it is intended that these will be updated weekly. The Sun Studio compiler is that used on Solaris: these runs were on the Linux version. All the other platforms are using gcc 4, so this provides an opportunity for checking for use of gcc-specific features and

Hola a todos. Estoy atascado en un sitio que no me he encontrado antes, debe ser fácil y rápido, a ver si alguien me puede ayudar. Puesto fácil, tengo: > aa <- matrix(11:19,3,3) > aa [,1] [,2] [,3] [1,] 11 14 17 [2,] 12 15 18 [3,] 13 16 19 Quiero la fila cuyo primer elemento es 12 y el segundo 15. > aa[aa[,1:2] == (c(12,15)),] Error: (subscript) logical

Hello, Thank you to all those great folks that have helped me in the past (especially Dennis Murphy). I have a new challenge. I often generate time-series data sets that look like the one below, with a variable ("Phase") which has a series of flat-topped peaks (sample data below with 5 "peaks"). I would like to calculate the phase value for each peak. It would be great to