similar to: Needed: Beta Testers and Summer Camp Students

Dear Deepayan and dear list, I notice a small inconsistency with the command completion of the R CMD check. --no-latex is deprecated sincs R 2.12.0 and defunct since 2.13.0 but the command line completion still suggests it: cb at cbdesktop:~/r-devel$ bin/R CMD check --no-<here I hit tab> --no-clean --no-examples --no-latex --no-vignettes --no-codoc --no-install

Dear Deepayan and dear list, I notice a small inconsistency with the command completion of the R CMD check. --no-latex is deprecated sincs R 2.12.0 and defunct since 2.13.0 but the command line completion still suggests it: cb at cbdesktop:~/r-devel$ bin/R CMD check --no-<here I hit tab> --no-clean --no-examples --no-latex --no-vignettes --no-codoc --no-install

In process of creating data package from an existing one. The current package has both raw data files and the associated RData objects created from them. Currently, the data subdirectory is 1.5Mb and the extdata is 5.4Mb. Never having created a data package before, how is this best done? Should the data package contain only the raw data, or the RData objects too (tightly coupled)? If the later,

Hi, I am Parthasarathy G , from IIT Maras ( India ). I am currently in third year of the undergraduate course. I would like to contribute to the R project. Can anyone guide me regarding this? Thanking you, Parthasarathy [[alternative HTML version deleted]]

Is there a 'proper' way of checking if cluster is active. For example, I create a cluster called .PBcluster > str(.PBcluster) List of 4 $ :List of 3 ..$ con :Classes 'sockconn', 'connection' atomic [1:1] 3 .. .. ..- attr(*, "conn_id")=<externalptr> ..$ host: chr "localhost" ..$ rank: int 1 ..- attr(*, "class")= chr

Dear all: I have a big data file of 60000 columns and 60000 rows like that: AA AC AA AA .......AT CC CC CT CT.......TC .......................... ......................... I want to transpose it and the output is a new like that AA CC ............ AC CC............ AA CT............. AA CT......... .................... .................... AT TC............. The keypoint is I can't read

Hi all, Is there a way to get cran R to set the working directory to be wherever the source file is? Each time I work on a project on different computers I keep having to set the working directory which is getting quite annoying. Thanks, Sachin [[alternative HTML version deleted]]

I have packages where I know CRAN and other test platforms do not have all the resources to build the vignettes, for example, access to databases. Previously I think putting BuildVignettes: false in the DESCRIPTION file resolved this, by preventing CRAN checks from attempting to run the vignette code. (If it was not this, then there was some other magic I don't understand.) Now, when

Hi, all I would like to use R to perform k-means clustering on my data which included 33 samples measured with ~1000 variables. I have already used kmeans package for this analysis, and showed that there are 4 clusters in my data. However, it's really difficult to plot this cluster in 2-D format since the "huge" number of variables. One possible way is to project the

Hello! I am having an issue with the OrgMassSpecR package. I run my HPLC using a DAD detector. My raw data is exported form chemstation as a csv file. I then upload the csv into Rstudio no problem. Using the DrawChromatogram function, I get a nice chromatogram, and my retention time, peak area, and apex intensity values are given as well. The problem comes with the peak area value given. The

sorry, I forgot my sessionInfo: please see below. -------- Original Message -------- Subject: puzzled with plotmath Date: Thu, 20 Jan 2011 12:48:18 +0100 From: Claudia Beleites <cbeleites at units.it> To: R Help <r-help at r-project.org> Dear all, I'm puzzled with matrix indices in plotmath. I'm plotting matrix elements: Z [i, i], and I'd like to put that as label.

Dear R Developers, Recently filed (and dismissed ;) ) law suit by Astrolabe against tz database developers caused a lot of media-press and discussions and created some kind of precedence in the USA [3]. But also it imho showed that similar attacks might happen in the future, and possibly against data sets which are not that obviously "factual" thus after all might fall under copyright

Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down the input file (the shift is the number of lines of the included file). Is that known? Searching didn't turn up anything, yet I think there are more people than just me using keep.source. Example: $

Hi, I am currently analysis Raman spectroscopic data with the hyperSpec package. I consulted the documentation on this package and I found an example work-flow dedicated to Raman spectroscopy (see the address : http://hyperspec.r-forge.r-project.org/chondro.pdf) I am currently trying to remove outliers thanks to PCA just as they did in the documentation, but I get a message error I can't

Dear R users, Here is my problem: I have an array with at least four dimensions: > dim(myArray) [1] 20 17 3 6 I'd like to apply a function to each occurrence of the matrix (3x6) defined by the last two dimensions. This interpolation function always return a matrix of the same dimensions as its argument: > interpSecteurs.f(myArray[1, 1, , ]) secteur rotation 1 2 3

I'm attempting to sort a 3 dimensional array that looks like this > x , , 1 [,1] [,2] [1,] 9 9 [2,] 7 9 , , 2 [,1] [,2] [1,] 6 5 [2,] 4 6 , , 3 [,1] [,2] [1,] 2 1 [2,] 3 2 Such that it ends up like this .... > y , , 1 [,1] [,2] [1,] 2 1 [2,] 3 2 , , 2 [,1] [,2] [1,] 6 5 [2,] 4 6 , , 3 [,1] [,2]

Tom Roche Thu, 12 Jan 2012 11:56:25 -0500 >>> * I have access to the cluster [where I want to run R] configured >>> [in .ssh/config] such that I can `ssh t` from commandline. >>> 1 I can open an R file on the cluster with >>> `C-x C-f /t:/home/me/onlyOrigDN2.r` >>> from my laptop, and note the following >>> *Messages* >>> >

Dear Group, I am looking for ways to use R and Matlab. Doing the data transformations in R and using the data in Matlab to analyze with some pre-defined scripts. Any good ways to transfer the data into matlab in its most recent version? I tried using R.matlab but the writeMat output is not readable by Matlab. I just need to output a data.frame and read it as is into matlab where I can do any

Dear all, I just noticed, that prompt () looses backticks that protect default arguments: f <- function (FUN = `*`) {} cat (prompt (f, NA)$usage) yields: \usage{ f(FUN = *) } %- maybe also 'usage' for other objects documented here. without the backticks, which is of course found by R CMD check as syntax error. While this is easily fixed if the .Rd is further edited manually, I

Dear List, a second, more general, question concerning S4 classes. I have a bunch of functions/methods for my class. At the moment I have them as methods, because they work on objects of my S4 class and therefore "belong" to that class. On the other hand, it is comparably unlikely that someone else wants the same kind of method. And package.skeleton () produces the