Displaying 20 results from an estimated 8000 matches similar to: "install error - Netcdf library (linux)"
2013 Mar 07
0
install Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2013 Feb 05
1
ncdf4 installation problem: undefined symbol [SEC=UNCLASSIFIED]
Hello,
I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1.
Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local.
When attempting to install ncdf4 it is failing with:
** testing if installed package can be loaded
Error in
2015 Mar 24
3
NetCDF
Buenas tardes,
pido disculpas si mi consulta es demasiado elemental, pero actualmente
encuentro una gran barrera para continuar mi trabajo si no lo solvento.
Soy usuaria principiante de R, estoy trabajando con una base de datos
climática <https://digital.csic.es/handle/10261/104742>que se encuentra en
formato netcdf4 y necesito transformarla a la versión 3 con el fin de
visualizarlo en un
2012 Oct 22
2
Problem installing ndf library
Hello,
I am a new user of R and Linux (debian squeeze), and I am trying to install
the ncdf library.
First I don't know wich is the best to use (ncdf or ncdf4), But not matter
the one I tried to install, it always failled.
I try to find a solution to this common problem on the web, but I never find
the good way to solve it.
I hope you could help me I try many things during two days and now I
2012 Jan 03
1
where to ask questions regarding package=ncdf?
Should one ask questions relating to the R package 'ncdf' here? or
look for a more netCDF-oriented (but probably less R-oriented) list?
Why I ask:
I'm relatively new to R, which I've only used in the past for graphics.
I'm trying to learn R as an alternative to manipulating netCDF files
with NCO (which works well but lacks all the other R goodnesses). Hence
I've got a
2010 Mar 09
1
ncdf installation
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
**
2008 Dec 23
1
NetCDF within R: installation assistance
Greetings. I am attempting to add NetCDF libraries within R, and have
failed. We have R version 2.8, and are running on a 64-bit Redhat Linux
2.6.18 kernel:
Red Hat Enterprise Linux Client release 5.2 (Tikanga)
Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5
09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
I have run the installation instructions found at
2010 Mar 24
1
install ncdf package
Dear R users
I am attempting to add lncdf_1.6.tar.gz libraries within R, and have
failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux
2.6.293.-60.fc10.x86_64.
I've run R CMD INSTALL ncdf_1.6.tar.gz
and I have the following
---------------
* Installing to library '/usr/lib64/R/library'
* Installing *source* package 'ncdf' ...
checking for gcc... gcc
2011 Sep 12
1
Problem in put.var.ncdf
Dear all,
I have a problem in writing a variable to a NetCDF-File.
My code works pretty well until the step put.var.ncdf():
# Get variables
#---------------------
data1 <- open.ncdf("PREC_me_03-1500.nc")
prec1 <- get.var.ncdf(data1,"PRECT")
dim.time <- get.var.ncdf(data1,"time2")
close.ncdf(data1)
# Calculation
#---------------------
spi24.me <-
2018 Mar 28
0
netCDF to GeoTIFF by layer in r
Hi Ahmed,
When reading from a ncdf file you can use the 'varname', 'lvar' and 'level' arguments - see the 'Details' section in the docs
https://www.rdocumentation.org/packages/raster/versions/2.6-7/topics/raster <https://www.rdocumentation.org/packages/raster/versions/2.6-7/topics/raster>
We can't tell what is in the ncdf file from what you report other
2008 Jan 22
1
install ncdf package on a 64-bit machine
Dear All,
I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried
to install ncdf package but got the following error message when using
netcdflib:
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
-I/home/ljin/share/R-2.6.1/include
-I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
2011 Mar 16
2
how do we read netcdf / hdf files in R?
Dear R Users,
How do we read netcdf / hdf format files in R ?
Also, can we convert netcdf to hdf format in R?
Great Thanks,
Best Regards,
Yogesh
[[alternative HTML version deleted]]
2010 Oct 09
1
ncdf installation in R
Hi All,
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz
I get this
2012 Nov 09
1
decorating API in R
How best to implement a decorator pattern in R? What I mean, why I ask:
A group of ncdf4 users is trying to make it easier (notably for ourselves :-) to write correctly IOAPI-formatted netCDF. Since IOAPI
http://www.baronams.com/products/ioapi/
decorates netCDF, one obvious way to do a package=ioapi is to decorate the netCDF API from package=ncdf4. E.g., to add a data variable (datavar) with
2009 Nov 10
3
NetCDF output in R
Dear CSAG R users,
I will be glad if someone can point out what I am doing wrong or not doing at all in this.
I am trying to write out netcdf file in R. I have 26 time step but only the first time step is written.
For example:
>library(ncdf)
>path <- '/home/work/'
>forecast <- open.ncdf(paste(path,'cam.1980.2005.nc',sep=""))
> fore <-
2009 Nov 10
3
NetCDF output in R
Dear CSAG R users,
I will be glad if someone can point out what I am doing wrong or not doing at all in this.
I am trying to write out netcdf file in R. I have 26 time step but only the first time step is written.
For example:
>library(ncdf)
>path <- '/home/work/'
>forecast <- open.ncdf(paste(path,'cam.1980.2005.nc',sep=""))
> fore <-
2009 Apr 21
1
joined R-today
Friends,
I am a newbie to R. Just installed and started with R. I installed netcdf
library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the
following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/usr/local/netcdf/include
-with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz
The installation was successful. But when i try to use ncdf inside R, i
2004 Mar 13
1
Installing ncdf package
Hi
I used the command
R CMD INSTALL ncdf
to install ncdf package in linux. Can somebody explain to me what might
be wrong. Thanks. Below is the error.
* Installing *source* package 'ncdf' ...
Special note:
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for
2015 Mar 24
3
NetCDF
Buenas tardes,
gracias a ambos por su ayuda, conseguí con éxito finalmente instalar ambos
paquetes y abrir el netcdf de versión 4 desde RStudio.
Mi consulta al siguiente paso, después de buscar sobre el tema es, como
creo que no es posible realizar la transformación de netCDF-4 a netCDF-3,
¿es posible guardar con raster ese archivo .nc que pude abrir en R y ya
llevarlo al SIG?
Para ello he
2018 Mar 28
2
Fwd: netCDF to GeoTIFF by layer in r
Hi
I have a netCDF file of volumetric soil water content at four
different soil layers and want to convert each soil layer in the
netCDF file to a GeoTIFF layer. This code converts the netCDF file to
one GeoTIFF layer, i.e. unclear which soil depth.
file.nc <- "C:/Soil_Weather_data/Agro/VMC21/VMC21.nc"
file.tiff <- "C:/Soil_Weather_data/Agro /VMC21/VMC21"
importnetcdf