similar to: Difficulty in caper: Error in phy$node.label[which(newNb > 0) - Ntip]

Hi there, > > I am using the function pgls in the CAPER package, everything seems to run > fine except for one of my variables. > When using this variable as continuous the anova works without problem, > but if using the same variable as factor (in fact, this is what it is), the > program returns this answer: > > Error in terms.formula(formula, data = data) : >

Dear R experts, I hope this is the right list for my question. As a newcomer in R, I am testing the R CAPER package, applying a simple regression on a phylogeny tree with three binary traits: (t1, t2, t3). My goal is to test the sensitivity to a correlation between t1 and t3. But if a correlation of 100% is considered (i.e. t3 = t1). The pgls method of CAPER seems to crash: You can find there

## I clicked the send-button too quickly, before changing the title of the message etc... Sorry.## I am running following phylogenetic analyses with the caper package: data=read.table(file="data.txt",header=T,sep="\t") tree = read.nexus("Tree.nex") primate = comparative.data(phy=tree, data=data,              names.col=Species, vcv=TRUE, na.omit=FALSE,

I can get btrfs to throw a kernel bug easily by running btrfs fi defrag on some files in 3.9.0: May 7 01:57:33 caper kernel: [ 0.000000] Linux version 3.9.0-030900-generic (apw@gomeisa) (gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5) ) #201304291257 SMP Mon Apr 29 16:58:15 UTC 2013 ... May 7 02:09:21 caper kernel: [ 726.745485] ------------[ cut here ]------------ May 7 02:09:21 caper

Hi I try ? Iramuteq ? and when I?ll like ? methode reinert ? I have this message Erreur R Loading required package: Matrix There were 50 or more warnings (use warnings() to see the first 50) There were 50 or more warnings (use warnings() to see the first 50) Error in Ntip + Nnode : non-numeric argument to binary operator Calls: plot.dendropr -> plot.phylo Execution halted 1 None Loading

still digging at this: [2003/01/20 14:26:38, 2] passdb/pdb_ldap.c:ldapsam_connect_system(421) ldap_connect_system: succesful connection to the LDAP server [2003/01/20 14:26:38, 4] passdb/pdb_ldap.c:ldapsam_open(472) The LDAP server is succesful connected [2003/01/20 14:26:38, 4] passdb/pdb_ldap.c:ldapsam_getsampwnam(1573) We don't find this user [Administrator] count=0 [2003/01/20

Hi, everybody! Problem in "tftp:(ack) Connection refused" was resolved with physically turning on client PC to the server's subnet (4th). Now I try to do remote booting, but after DHCP-request (it's successfull) I get the error "PXE-T01: File not found, PXE-E3B: TFTP Error - File Not found, PXE-M0F: Exiting Broadcom PXE ROM. I followed

Dear R-helpers I have generated a suite of GLMs. To select the best model for each set, I am using the meta-analysis approach of de Luna and Skouras (Scand J Statist 30:113-128). Simply put, I am calculating AIC, AICc, BIC, etc., and then using whichever criterion minimizes APE (Accumulated Prediction Error from cross-validations on all model sets) to select models. My problem arises where I

Hi, we try to do a logistic regression with the function glm. But we notice that this function don't give the same results as the SAS proc catmod (differents estimate given). We try to change the contrast on R system with: > options(contrasts=c(unordered="contr.SAS",ordered="contr.poly")) We also try with brlr and logistf functions. Unfortunately, the estimate