similar to: Generating 1-bit and 8-bit BMP files using R

I am not sure if I should ask this question in this list. But I'll try. Currently I am trying to analyze images using EBImage and biOps. One of the features that I need to extract from various images is the color spectrum, namely, which colors each image consists of. So, each image hopefully can be converted into some sort of color histogram so that color ingredients are easily comparable

Dear all, I am stuck the reading of a file which has 100s of rows and variable column counts. The tab-limited data file looks something like: Some_Text 1 3 123 1534 -119 1010 178 Some_Taxt 1 3 133 1434 -219 1010 178 Some_Tsxt 1 3 244 1334 -319 1010 178 Some_Tfxt 1 3 153 1234 -419 1010 178 Some_Trxt 1

Dear all, I'm stuck with a problem using plyr to process a rather large junk of data. What I'm trying to do is applying a moving average to all the subparts of the dataframe (the example data can be found here https://dl.dropboxusercontent.com/u/2414056/testData.Rdata). require(plyr) load("testData.Rdata") applyfilter<-function(x){ return(filter(x,rep(1/5, times=5))) }

Dear Rxperts, I am aware of Sweave that generates reports into a pdf, but do know of any tools to generate to export to a MS Word document... Is there a way to use R to generate and export report/publication quality tables and figures and export them to MS word (for reporting purposes)? Thanks so much, Santosh [[alternative HTML version deleted]]

I am out of my league with this question. The following code starts the java imaging program ImageJ from within R, and displays an image (assuming ImageJ is installed on your computer). library(RImageJ) img <- IJ$openImage( file.choose() ) #pick an available .tif file img$show() # make the image object visible # An image is now displayed # find out about the objects involved >

Hi, all. I searched a lot at mailing list, installed EBImage and gtk packages, but I couldn't make this simple work: How to add a image file (jpg or bmp ou gif) to an existing plot window (not plot over the image), like the code below (pseudo function add.image): plot(1:10,1:10,main="test") image = read.X("myimage.jpg") add.image(image, x.left=2, y.bottom=4,

Hi the list, Using misc3d, we can export 3d dynamic graph in pdf format. Is it also possible to export these graph into a format that we can publish on the web? Christophe -- Christophe Genolini Maître de conférences en bio-statistique Vice président Communication interne et animation du campus Université Paris Ouest Nanterre La Défense [[alternative HTML version deleted]]

Hi, I'm trying to create a boxplot from the summary of a large data set and I'm having trouble finding any way to do this. I'm familiar with, but by no means good at, using R, so the only two websites I've found pertaining to this issue have been way over my head. I was hoping for a simple set of instructions that I could follow to produce a boxplot, in R, for three groups of

I was thinking of splitting the y-axis into two? Is this possible? Thanks -- Shane [[alternative HTML version deleted]]

> replicate(1000, {dev.new(); dev.off()}) R(83204,0xacdc1a28) malloc: *** mmap(size=16777216) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug R(83204,0xacdc1a28) malloc: *** mmap(size=16777216) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug ... *** caught bus error

Hello everybody, I'm running R under Mac OS 10.6.3 on a MacBook 2.16 GHz Intel Core 2 Duo. I've recently installed R 2.11.0 and the RImageJ library v. 0.1-142. When trying to follow the example given in the package manual and I get the following error: download.file( "http://www.google.fr/intl/en_en/images/logo.gif", dest = "google.gif" ) trying URL

Hello, Does anyone know of an R package that can read Windows BMP format images? Many thanks, Greg Jefferis. -- Gregory Jefferis, PhD Division of Neurobiology MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK. http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis

Full_Name: Manuel Luethi Version: 2.9.1 OS: Windows XP Submission from: (NULL) (129.132.128.136) Hi I created the following vectors: p_1=c(0.2,0.2,0.2,0.2,0.1,0.25,0.4,0.1,0.25,0.4,0.1,0.25,0.4,0.1,0.25,0.4,0.2,0.5,0.8,0.2,0.5,0.8,0.2,0.5,0.8,0.2,0.5,0.8) p_2=c(0,0,0,0,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.5,0.4,0.25,0.1,0.4,0.25,0.1,0.4,0.25,0.1,0.4,0.25,0.1) As these are

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I realize that this question has been asked before (2003); From: Yi-Xiong Zhou Date: Sat 22 Nov 2003 - 10:57:35 EST but I am hoping that the answer has changed. Namely, I would rather read the BMP (or TIFF) files directly instead of putting them though a separate utility for conversion as suggested by, From: Prof Brian Ripley Date: Sat 22 Nov 2003 - 15:23:33 EST "Even easier is

Dear R-users Please excuse me if this topic has been covered before, but I was unable to find anything relevant by searching I am currently doing a comparison of two biological variables that have a highly significant linear relationship. I know that the p-value of linear regression is not so interesting in itself, but this particular value does raise a question. How does R calculate

Dear All,   another quick question, this one is on skipping part of my code, so let us say:   a <-5 b <-2 e <-0   d <-a+b f <-a-b   what I would like to do is to have R NOT to calculate the value for d in case the value of e equals to zero (essentially skip that "chunk"), but instead move on to calculate te value for f. In the code I am working with the value of e changes,

I am a very new R user. I am trying to write functons and debug functions. One problem for me is that I need to alwasy copy the whole function body and resubmit to R console every time I changed even one line of the function. Because I have long algorithm function, copying and pasting is very tedious for me. I assume if I save the function files, R should be able to just use the new function body

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Dear all, I am facing a challenge when applying the outer product with a matrix by rows. What I have is a rather big matrix, which I would like to convert into a different matrix by doing something like outer(matrix_row, vector, function(x,y) x[1]+5*x[4]/y) In order to get there, I tried to get the matrix into a list using the mefa package, as subsetting the original data appears too