similar to: data grouping and fitting mixed model with lme function

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Dear all, I have two sets of data (say set1 and set2) as follow: set1 x1 x2 x3 0.30 0.43 3.88 0.38 0.59 3.53 0.30 0.42 2.12 0.33 0.53 2.12 0.30 0.47 3.76 set2 y1 y2 y3 0.32 0.47 5.18 0.23 0.26 1.06 0.42 0.65 3.88 0.28 0.38 3.76 0.35 0.47 1.41 The "pairs" function (such as pairs(~x1+x2+x3 data=set1, main="Simple Scatterplot Matrix") ) is

Dear all, I would like to draw a dendrogram and mark some parts/branches (by using "segments") including their labels. If I draw it without specifying the length of x axix, I am able to do that (as in My dendrogram 1 of the following codes). However, if I want to specify the x axix, I am not able to draw marking line (by using "segments") including labels (as in My dendrogram

Dear R users,   I need to draw a barplot with 2 Y axis. I have 3 days each of wich having 2 groups (and error bar for each of them). The height of the 3rd day is too tall compared to others. That's why I have to use a second Y axis for that. I am using  "barplot2" function of "gplots" library (to be able to add error bars as well). Data and  codes currently I am using is

Dear All,   I need to create eps file which is the required figure format  of the journal that I want to submit a paper. I am able to create files in pdf or wmf format but not in eps format. Is there a way to convert pdf or wmf to eps? or alternatively, how can I create an eps file in R?   Any help is deeply appreciated.   Kind Regards   Seyit Ali

Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034

Dear R users, I have recently started using R. I need to execute a FORTRAN file within R. Does it allow to call executable (or FORTRAN code) file within R ? Thank you very much in advance. Kind Regards Seyit Ali KAYIS ___________________________________________________________________________ THE FOLLOWING WARNINGS ATTACH TO THIS COMMUNICATION This material is intended

Hello all R-user I am relative new to the R-environment and also to GLMM, so please don't be irritated if some questions don't make sense. I am using R 2.0.0 on Windows 2000. I investigated the occurrence of insects (count) in different parts of different plants (plantid) and recorded as well some characteristics of the plant parts (e.g. thickness). It is an unbalanced design with 21

Hi again, thank you for your previous answers. Just another question, though ... I get the following variance components after fitting a mixed model. Groups Name Variance Std.Dev. Corr PlantID TreatmCtrl 0.51784 0.71961 TreatmNoAccess 4.77469 2.18511 -0.063 TreatmNoKeel 4.22726 2.05603 0.513 0.751 TreatmNoSpur 0.45918

Hi, I am new to this list as a poster, but a reader for some time. I've using R for several weeks now, and I have a lot of questions about certain procedures. Here I go: I want to test if there are differences in the time spent by pollinators visiting flowers of a given plant species, according to a number of experimental manipulations made on those flowers. All experimental

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Hi, i still try to sieve system. ok first our deliver command procmail. our user accounts stored in openldap, mail files are in Maildir folders in 15-lda.conf recommented protocol lda { # Space separated list of plugins to load (default is global mail_plugins). mail_plugins = $mail_plugins sieve log_path = info_log_path = } after that, in master.cf i added dovecot unix -

Dear R users, Could you help my with the following problem? I want to repeat a glm analysis with 2 independent variables for all 900 variables (snps) in my data set. So, I want to check whether snp1 has a different effect on my outcome variable in patients and controls(phenotype). And repeat that for snp2 to snp900. Is there an easy way to get a summary of the data, e.g. a list of P values of all

Hello all, I'm having difficulty with setting up a mixed model using lme in the nlme package. To summarize my study, I am testing for effects of ornamentation on foraging behavior of wolf spiders. I tested spiders at two different ages (penultimate vs. mature) and of two different phenotypes (one species tested lacks ornamentation throughout life [non-ornamented males] while the other

Hi, can we prevent download messages from server user by user ? sme common used mail's message must be remain at the server, but sometimes we download them ? thanks in advance -- Sel?uk YAZAR

Hi, I am trying to use dovecot as lda. I have put this line in my .qmail-default file: #|/var/qmail/bin/preline -f /usr/local/libexec/dovecot/dovecot-lda -d $EXT@$USER It is working correct with real addresses but couldn't find forwarding addresses. This is my /usr/local/etc/dovecot-sql.conf: driver = mysql connect = host=localhost user=vpopmailuser password=vpopmailpassword

Dear R-experts, My problem is how to handle a 10GB data file containing genotype data. The file is in a particular format (Illumina final report) and needs to be altered and merged with phenotype data for further analysis. PERL seems to be an frequently used solution for this type of work, however I am inclined to think it should be doable with R. How do I open a text-file, line by line,

I have a path: path = "/nfs/users/nfs_n/ns9/ Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll trained without akapn+tnik.csv" I wish to replace the spaces with "\ " so that it can be read by a system call to unix. Using gsub I try: > gsub(" ","\\ ",path) [1] "/nfs/users/nfs_n/ns9/Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll

Hi, in dovecot documentation i try to implement quota per users. i added dovecot-ldap.conf file user_attrs = homeDirectory=home, uidNumber=uid, gidNumber=gid, mailbox=mail, quota=quota_rule=*:bytes=%$ and i see in logs quota(quota_rule=*:bytes=%$)=*:bytes=241800 Debug: Added userdb setting: plugin/quota_rule=*:bytes=241800 but still mail is delivering , i'not sure other settings about

Hi, we have running system postfix+dovecot+openldap. i have installed pigeon hole, and afterlogic webmail php my test system. when i try to connect with telnet [root at ....mail postfix]# telnet 0 4190 Trying 0.0.0.0... Connected to 0. Escape character is '^]'. "IMPLEMENTATION" "Dovecot Pigeonhole" "SIEVE" "fileinto reject envelope encoded-character