similar to: Correct value of R_HOME

I am troubled by what appears to be a glitch in the current distribution, or in its installation on our system. I've traced it, and found a work- around. Is this normal? Is there a cleaner solution? The problem: During a package installation, the warning message "WARNING: ignoring environment value of R_HOME" from line 31 of <R_HOME>/bin/R is accidentally spliced into the

Colleagues, I am trying to understand how R (2.12.1) obtains the PATH environment variable in Windows (7 or Vista). Startup {base} directs one to: "R_ENVIRON" -- which equals "" in my systems R_HOME/etc/Renviron.site -- which does not exist Next, it directs to: R_HOME/etc/Rprofile.site -- which also does not exist (the expected behavior in a "factory-fresh"

On 7/28/2015 1:32 PM, Uwe Ligges wrote: > Just add the line > > R_LIBS_SITE=F:/R/library > > to the file R_HOME/etc/x64/Renviron.site Thanks, Uwe I have no way to test this and our IT people who do the installation know nothing of R, so follow-up questions: * There is no R_HOME/etc/x64/Renviron.site file, but there is a R_HOME/etc/Rprofile.site I can modify and ask them to

I'm the faculty member in my department who advises our IT staff on the details of installing R for students and faculty on our Windows 7 lab network. We are about to upgrade from R 3.1.1 to R 3.2.1, and once that is done, this version of R and all installed packages will be frozen in the image that appears in C:/Program Files/R/R-3.2.1/ on every lab computer, and this image is refreshed

Hi, I have some trouble to get the Python bindings RPy2 running with the latest release of R. I'm using Windows. The reason is, that RPy2 looks at certain places for R.dll, as $R_HOME/bin and $R_HOME/lib, but not at $R_HOME/bin/i386 where the dll is located on my machine. So I suspect that the directory structure has changed and the RPy2 team did not notice it. I would like to discuss a

I'm trying to run multiple simulations using R on a cluster of pentiums running Solaris X86 by batching the R routines and simultaneously farming them out to the cluster nodes. This works fine on some of the machines, but on others the directory structure is mapped differently, so that when I try to run R, it can't be found, I can get around this by running /net/mp1/space/local/bin/R

Hello All: I'm still unable to get Rprofile.site to set, e.g., options(max.print=222), as I did with previous versions of R. I just found similar questions posed by Trevor Miles and Ross Bowden with replies by Uwe Ligges and Duncan Murdoch. In addition to the things I tried documented below, I also copied Rprofile.site into "R_HOME/etc/i386" and

When the R_HOME environment variable is set, R issues a warning messages when it starts up. When doing 'make check' this causes the check for eval-etc.R to fail: [...] make[3]: Leaving directory `/Volumes/app/R/src/R-1.4.0_patched_2002-01-24/tests' running strict specific tests make[3]: Entering directory `/Volumes/app/R/src/R-1.4.0_patched_2002-01-24/tests' running code in

ligges@statistik.uni-dortmund.de wrote: > > Was on R-help: > > Subject: Re: [R] .Renviron and Renviron.site (on Windows XP) > Date: Thu, 11 Sep 2002 > From: "James Rogers" <jrogers@cantatapharm.com> > > At least on the windows version of R the file > ...../etc/Renviron.site > won't be interpreted as mentioned in, e.g., ?.Renviron. >

I have some questions and observations about these: Will these replace manually setting options(CRAN), which doesn't work in R-2.1.0? In R-2.1.0, setRepositories() looks to see if options("repos") contains a CRAN entry and will not override that CRAN entry even if the $R_HOME/etc/repositories file (which setRepositories reads from) contains a CRAN entry. Why is this? The user

Hello, I have come across two separate packages that have a Makefile in inst/doc which use the R_HOME variable. In both cases, the path to R_HOME gets munged in such a way that commands that include R_HOME fail on Windows: For example, one Makefile, for the xmapcore package ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xmapcore/username/password: readonly) has this:

Hello all, I recently installed rpy2 so that I could use R through Python. However, R was not recognized in the command line. So I decided to add it to the PATH variables. But it just doesnt work.... And what I mean by it doesnt work is : No matter what I type at the prompt in DOS- be it R, Rcmd, R CMD, Rscript- it is not recognized as a command. Path variables used : 1. %R_HOME% -->

Upgraded to 2.15.1 from 2.15.0 this morning, on Windows 7. I'm setting R_HOME in Control Panel, and before the upgrade, 2.15.0 recognized the value with no problems and would use it to find rprofile.site, etc. Now, after upgrade, neither .0 nor .1 recognize it at all. From the cmd line, Windows indicates it is definitely set to the value I've specified. Anyway, as a result, R is not

Hi, I'm running R-1.9.1 and I'm unable to succesfully install packages using either 'R CMD INSTALL xxx.tar.gz' or 'install.packages("xxx"). For example, if I try to install the msm package I get: R CMD INSTALL msm_0.4.1.tar.gz * Installing *source* package 'msm' ... ERROR: R_HOME ('/root/R-1.9.1') not found ERROR: installing package DESCRIPTION

Hi, Guys I run one simple R script like this library(e1071) data(iris) attach(iris) model <- svm (Species~., data=iris) The R version is 1.4.1. The OS is standard redhat 7.2. Then I got a segmentation fault like this (run through R CMD BATCH scriptName) /usr/local/R/lib/R/bin/BATCH: line 54: 28513 Done ( echo "invisible(options(echo = TRUE))"; cat

Dear All, I would like to reset default R_HOME PATH for R.3.1.3. I installed R-devel in /usr/local/R-devel but I can't install many packages as tcltk. I uninstalled R-devel and I would reuse R.3.1.3 but the PATH is remaining to /usr/local/R-devel. I touch ~.Renviron file with R_HOME=/usr/lib/R/bin/ RSTUDIO_R_HOME=/usr/lib/R/bin/ R_LIBS=~/R/x86_64-pc-linux-gnu-library/3.1

Hi, Recently, I made an R package that used the C++ library Boost.Thread (http://www.boost.org/doc/libs/1_54_0/doc/html/thread.html) for multithreading. Previously, I have posted a question at stackoverflow (http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-http), and I also asked at rcpp-devel

Hi my installation of ggobi (!) was successful, but when I try to install Rggobi as described on http://www.ggobi.org/INSTALL.html: as non-su: R_HOME=/usr/lib/R export R_HOME GGOBI_ROOT=/usr/local/src/ggobi export GGOBI_ROOT R_LIBS=/usr/lib/R/library export R_LIBS as: su ln -s $GGOBI_ROOT/lib/libggobi.so /usr/lib/. ln -s $GGOBI_ROOT/lib/libgtkext.so /usr/lib/. R CMD INSTALL Rggobi_0.53-0.tar.gz

Hello, I am having the following error while calling an R script through PHP. /usr/local/bin/R: line 227: /kk/Programs/R-2.13.0/etc/ldpaths: Permission denied ERROR: R_HOME ('/kk/Programs/R-2.13.0') not found I had compiled R from source and placed the generated R shell script in /usr/local/bin. Can you give me an insight of how to give permission to access the ldpaths file and why is

I am attempting to build a customized R installer on Windows, using the Inno Setup installer. I am following the instructions in Section 3.1.8 of the R Installation and Administration Manual ("Building the Inno Setup installer"), which includes the following passage: An alternative way to customize the installer starting with a binary distribution is to first make a full