similar to: FW: Sourcing my file does not print command outputs

I looked at the documentation of source() and summary(), and I could not find the reason why calling something like: > summary(resamps) from the command line, works (it prints the summary) whereas calling summary(resampls) from a file that I source with source("my_file.r") does not print anything. How can I get summary(resamps) to print when I source a file with this command?

Say I train a model in caret, e.g.: RFmodel <- train(X,Y,method='rf',trControl=myCtrl,tuneLength=1) How can I save this to disk and load it later in R? How about an object of the class "resamples"? resamps <- resamples( list( RF = RFmodel, SVM = SVMmodel, KNN = KNNmodel, NN = NNmodel )) Thanks,

I have a binary classification problem where the fraction of positives is very low, e.g. 20 positives in 10,000 examples (0.2%) What is an appropriate cross validation scheme for training a classifier with very few positives? I currently have the following setup: ======================================== library(caret) tmp <- createDataPartition(Y, p = 9/10, times = 3, list = TRUE)

Hi Dan, Hi All, I read the below post. I am wondering how do I know which "keys" are available, e.g. "core.r" and "pre". Where kind I find the definition of what can be adjusted and which "words" to use? Kind regards Georg > Gesendet: Donnerstag, 08. Juni 2017 um 16:16 Uhr > Von: "Nordlund, Dan (DSHS/RDA)" <NordlDJ at

This is a general question about Design of experiments. If i am not allowed to post general questions like this here please accept my apologies and ignore the question. I did a DOE with six factors in eight runs. I know i cannot check for interactions using this design, but i tried the interaction plot and it showed me many interactions. After this I foldover the design and ran the 8 runs to learn

The following code fails to train a nnet model in a random dataset using caret: nR <- 700 nCol <- 2000 myCtrl <- trainControl(method="cv", number=3, preProcOptions=NULL, classProbs = TRUE, summaryFunction = twoClassSummary) trX <- data.frame(replicate(nR, rnorm(nCol))) trY <- runif(1)*trX[,1]*trX[,2]^2+runif(1)*trX[,3]/trX[,4] trY <-

Hi all, I've simple code to read a file (verify.txt in the same directory as the script file) but when I run this I get "Error in eval(expr, envir, enclos) : object "y" not found". data_model.df = read.table("./verify.txt", header=TRUE, nrows=10); f <- lm(y ~ x) Could someone pls tell me what's wrong with this code? Sincere thanks!

Does this do what you want: mydata <-read.table('mydata.txt',header=TRUE, row.names=1) see ?read.table Daniel Nordlund Research and Data Analysis Washington State Department of Social and Health Services P.O. Box 45204 Olympia, WA 98504-5204 -----Original Message----- From: S Peri [mailto:biocperi at yahoo.com] Sent: Tuesday, October 05, 2004 1:03 PM To: r-help at

I am very new to Linux so I probably am doing something stupid but I cannot seem to update to R 2.15 Using Ubuntu 12.02 Precise Penguin I realise that debian packages are not updated regularly so I tried to follow the insructions at the R-site So far, I have modified /etc/apt/sources.list to read ## R CRAN added 2012-06-12 deb http://probability.ca/cran/bin/linux/debian squeeze-cran/ Issued

Hey all, Does anyone know how we can get train set and test set for each fold of 5 fold cross validation in Caret package? Imagine if I want to do cross validation by random forest method, I do the following in Caret: set.seed(12) train_control <- trainControl(method="cv", number=5,savePredictions = TRUE) rfmodel <- train(Species~., data=iris, trControl=train_control,

Dear Group I have few errors while installing package rattle from CRAN i do the installing from the local zip files... I am using R 2.4.0 do i have to upgrade to R2.4.1 ? ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils:::menuInstallLocal() package 'rattle' successfully unpacked and MD5 sums checked updating HTML package descriptions > help(rattle) No

Hello all, given two vectors X and Y I'd like to receive a vector Z which contains, for each element of X, the index of the corresponding element in Y (or NA if that element isn't in Y). Example: x <- c(4,5,6) y <- c(10,1,5,12,4,13,14) z <- findIndexIn(x, y) z [1] 5 3 NA 1st element of z is 5, because the 1st element of x is at the 5th position in y 2nd element of z is 3,

Hi All I have a vector of about 15 million numbers which I would like to plot. The goal is the see the distribution. I tired the usual steps. 1. Histogram : never gets complete my window freezes w/out log base 10 2. Density : I first calculated the kernel density and then plotted it which worked. It would be nice to superimpose histogram with density but as of now I am not able to get this

R 2.15.1 OS 10.7 Colleagues I have been an enthusiastic user of the sas7bdat package in R. However, several recent sas7bdat files sent to me from different sources cannot be read by the package. The error message is: Error in read.sas7bdat(FILENAME) : unknown host W32_7PRO please report bugs to sas7bdatRbugs at gmail.com I examined the file with a text editor and it contains

http://www.ncbi.nlm.nih.gov/pubmed/21418051 for the full reference. I don't have an electronic copy, but I do have that issue of Biometrics in my office. I'll have a copy sent over. Terry On 07/10/2012 04:08 PM, r-help-request at r-project.org wrote: > Send R-help mailing list submissions to > r-help at r-project.org > > To subscribe or unsubscribe via the World Wide

Hello all! I would like to delete multiple records on a single call. Something similar to the following line. new Ajax.Request(''/myctrl/delete/1,2,3,4,5'', {asynchronous:true, evalScripts:true}); However, I don''t know how to pass multiple parameters to one action (in a AJAX call). Is it possible? How could I do that? In other words, I want the Delete action to take

I am a consultant needing to learn virtual machines. Using XEN Server 6 as tool. I will put real internet servers on it when stable. Been working fine till it crashed out of the blue. This problem is from a full wipe and reload. Problem: 1. Build XEN Server 6. Works fine after install reboot. 2. Reboot XEN Server. Big message "The underlying Xen xapi is not running"

We had problems with our mail server. I have no idea whether this message has reached the list or whether there were any replies. So I retry ... ------------------------ Date: Wed, 5 May 1999 16:42:55 +0200 (CEST) From: "Uli Flenker; Raum 704" <uli at pcinternet.biochem.dshs-koeln.de> To: R-Mailing-List <r-help at stat.math.ethz.ch> Subject: ANOVA "ex post"

Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034

Hi Dan, sorry for the precedent email, I created a csv file of only 1000 records by mistake, that's why R has only read 1000 records. regards Anna ----- Messaggio Inoltrato ----- Da : "a.martino at crismaitalia.it" <a.martino at crismaitalia.it> A : "Daniel Nordlund" <res90sx5 at verizon.net>,<r-help at stat.math.ethz.ch> Oggetto : RE: [R] importing