similar to: Lambert W question

Dear list, I'm trying to embed OpenBUGS in an R package for use of it on 64-bit Linux. In order to get the CLI working one has to compile C code contained in $OpenBUGS/Manuals/CBugs.html (copied to say CBugs.c) using gcc -m32 -o bugs CBugs.c -ldl I put the OpenBUGS distribution in the ./inst subdirectory of the package root. Where should I now put the CBugs.c and how

Hi, I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat Enterprise Linux machine. Following various peoples' suggestions... This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe Within R, however, I get this: (setup the example from ?bugs, then....) R> schools.sim <- bugs(data, inits, parameters, model.file, n.chains=3,

Hello list, I?ve been trying to get OpenBUGS running on my mac using the wine emulator. I can run Openbugs just fine by doing: wine ~/OpenBUGS312/OpenBUGS.exe In the terminal, so OpenBUGS works. When I try to run the schools example using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no log, no script, no output of any sort. The rbugs () call makes the init,

Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can successfully switch to OpenBugs and run the same model and get the basic summary

Hi, I am trying to replicate Lambert (1992)'s simulation with zero-inflated Poisson models. The citation is here: @article{lambert1992zero, Author = {Lambert, D.}, Journal = {Technometrics}, Pages = {1--14}, Publisher = {JSTOR}, Title = {Zero-inflated {P}oisson regression, with an application to defects in manufacturing}, Year = {1992}} Specifically I am trying to recreate Table 2. But my

I've run into persistent problems with OpenBUGS crashing when using BRugs .53 and .71, and am hoping someone has suggestions. There is obviously something unusual going on in my environment, but I'm at a loss as to where to begin to try to solve it. In a nutshell, what happens is that, as soon as I call "modelCheck()" in BRugs, it gets an error or crashes ... but only some of

I installed wine 1.2.3 on Mac OS X 10.6.8 with the hopes of getting OpenBUGs running, but no success. It seems like OpenBUGs installs properly, but when I try to open it, I get the following: wine: cannot find L"C:\\windows\\system32\\OpenBUGS.exe What does this mean/how can I fix it?

Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode), not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I tried briefly, and realized few minor

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

Hi, this is the first announcement of a *developer version* of the R package BRugs, which is based on OpenBUGS 2.1.0. OpenBUGS 2.1.0 has been released earlier this week (http://mathstat.helsinki.fi/openbugs/). BRugs contains a complete OpenBUGS installation as well as R code to access OpenBUGS functionality from R. Simply install the package, load it and say ?BRugs and ?BRugsFit

Hi, I'm currently working on the below codes however whenever I run it in openbugs it gives an error message saying: unknown type of logical function error pos 76. Any help would be appreciated. ## bugs code library(R2OpenBUGS) sink("C:/Users/CCF/Documents/Suzie Work/PTY Project/Waterhole Correction/ungulate.txt") cat(" model{ # hyperparameters # habitat effects for each

Hi, I have a strange behaviour of openBUGS and WinBUGS when I start them from R. Version: R: 2.10.1 openBUGS: 3.07 WinBUGS: 1.43 R2WinBUGS: 2.1-16 BRugs: 0.5-3 I have a model and data without initial start values. If I use the stand alone versions of openBUGS and WinBUGS I don't have any problems and I get what I want. If I use function bugs() from R2WinBUGS- resp. BRugs-Library then

Hi there, I installed the latest OpenBUGS version (3.0.3) in program files folder but it seems that bugs use its own version of OpenBUGS. here is part of the message bugs returns ..... Welcome to BRugs running on OpenBUGS version 2.2.0 beta how can i configure BRugs to use the mine version of OpenBUGS? Cheers, SK --------------------------------- [[alternative

Hi all, I've managed to get JAGS working on my Ubuntu Hardy Linux with a 32-bit computer and AMD processors using R 2.8.1. JAGS is great. I've read that JAGS is the fastest, but that hasn't been my experience. At any rate, I have more experience with WinBUGS under Windows and would like a version of that working as well. It seems like I've read a lot on the subject and tried a

I installed XCode, XQuartz and OpenBUGS on my Mac using WINE. When I tried to test my installation I received the following error. If correct, BRugs does not exist for R 2.15.1. Is there a means to get arrange this problem? Thanks Paul The following code is an example from R Help bugs: > schools.sim <- bugs(data, inits, + parameters, model.file, n.chains=3, + n.iter=1000, +

Greetings: I'm going to encourage some students to try Bayesian ideas for hierarchical models. I want to run the WinBUGS and R examples in Tony Lancaster's An Introduction to Modern Bayesian Econometrics. That features MS Windows and "bugs" from R2WinBUGS. Today, I want to ask how people are doing this in Linux? I have found a plethora of possibilities, some of which are not

Hi, I'm working on the codes below however every time I run them when they get to OpenBUGS I keep getting the error message: array index is greater than array upper bound for hab. Any help would be greatly appreciated, Suzie Codes: ungulate <- read.csv(file.choose ()) #ungulate ungulate <- as.matrix(ungulate);colnames(ungulate)<-NULL;rownames(ungulate)<-NULL

Hi R users, I am trying to call openbugs from R. And I got the following error message: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ model is syntactically correct expected the collection operator c error pos 8 (error on line 1) variable ww is not defined in model or in data set [1] "C:\\DOCUME~1\\maomao\\LOCALS~1\\Temp\\RtmpqJk9R3/inits1.txt"

(Using BRugs 0.7-5, R 2.14.2 32-bit on 64-bit Windows 7, OpenBUGS 3.2.1) 1. BRugs crashes R for me as follows. Sorry about the lack of detail; please let me know if / how to supply a more useful bug report on this issue. fit <- BRugsFit(...) # BRugs and OpenBUGS runs fine, the parameter estimates are reasonable # across 3 chains samplesBgr("beta") # crash

Dear Wine-friends, I was wondering if any of you would have a clue around why WinBUGS (http://www.mrc-bsu.cam.ac.uk/bugs/), a nifty Markov chain Monte Carlo sampler widely used in Bayesian statistical modelling, no longer works when run through any version of WINE newer than 1.1.12. I have encountered this issue of my machines at home (which runs on Zenwalk 6.0) and work (Mandriva 2008.1) a