similar to: How to apply XPath query on XML nodes separately?

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Hello R-help group, I have a question about merging lists. I have two lists: Genes list (hSgenes) name chr strand start end transStart transEnd symbol description feature ENSG00000223972 1 1 11874 14412 11874 14412 DEAD/H box polypeptide 11 like 1DEAD/H box polypeptide 11 like 3DEAD/H box polypeptide 11 like 9 ;;

Hallo, I just installed all needed packages for my project on my PC. But I cannot load all at one time. I now want to load limma. How can I realize the following plan: I want to install for example limma inclusive all needed other sub packages (add-on). Can anyone tell me the corresponding command? Thanks, Corinna Here is the result of the command library(): Pakete in Library

On Mon, Jan 26, 2015 at 12:24 PM, Hadley Wickham <h.wickham at gmail.com> wrote: > If it was any other environment than the global, you could use substitute: > > e <- new.env() > delayedAssign("foo", stop("Hey!"), assign.env = e) > substitute(foo, e) > > delayedAssign("foo", stop("Hey!")) > substitute(foo) Hmm... interesting

Hi, I am using this loop par(mfrow=c(3,3)) annos<-c(2001:2007,2009) for (i in annos) { t<-subset(masia,YEAR==i) t$FAMILIA<-drop.levels(t$FAMILIA) pie(table(t$FAMILIA),main=i) } To make piecharts of species composition among years (my data frame is called "masia"). So I get 1 piechart of the families that we have found in our survey each year. We don't have always

Only implemented for glsl->tgsi. Other converters just set precise to 0. Signed-off-by: Karol Herbst <karolherbst at gmail.com> --- src/gallium/auxiliary/tgsi/tgsi_build.c | 3 +++ src/gallium/auxiliary/tgsi/tgsi_ureg.c | 14 +++++++--- src/gallium/auxiliary/tgsi/tgsi_ureg.h | 20 +++++++++++--- src/gallium/auxiliary/util/u_simple_shaders.c | 2 +-

>>>>> Henrik Bengtsson <hb at biostat.ucsf.edu> >>>>> on Mon, 26 Jan 2015 12:41:48 -0800 writes: > On Mon, Jan 26, 2015 at 12:24 PM, Hadley Wickham <h.wickham at gmail.com> wrote: >> If it was any other environment than the global, you could use substitute: >> >> e <- new.env() >>

Hi, I got an interesting programming challenge: How do you inspect an object which is assigned via delayedAssign() and that throws an error as soon as it is "touched" (=the value is evaluated)? Is it possible? MINIMAL EXAMPLE: $ R --vanilla > delayedAssign("foo", stop("Hey!")) (If you find this minimal example silly/obvious, please skip down to the real

If it was any other environment than the global, you could use substitute: e <- new.env() delayedAssign("foo", stop("Hey!"), assign.env = e) substitute(foo, e) delayedAssign("foo", stop("Hey!")) substitute(foo) Hadley On Mon, Jan 26, 2015 at 12:53 PM, Henrik Bengtsson <hb at biostat.ucsf.edu> wrote: > Hi, I got an interesting programming

I'm trying to discern whether or not stack variables are all accessible through ExecutionEngine.cpp . Initially , I targeted the 'alloca' function as the source for all stack accession data , but I think that the function is too basic : ie , the type data may not be easily accessible from that function's scope . So my next idea was to use ExecutionEngine , because when data is

On 2008-09-16, at 19:01, Dane Napier van Dyck wrote: > I'm trying to discern whether or not stack variables are all > accessible through ExecutionEngine.cpp . > Initially , I targeted the 'alloca' function as the source for all > stack accession data , but I think that the function is too basic : > ie , the type data may not be easily accessible from that

mogene10stprobeset.db is generated with AnnotationDbi for mouse gene array. I don't find a package that seems generated by AnnotationDbi for exon arrays on the webpage you mentioned. Is it correct? On Tue, Oct 27, 2009 at 7:00 PM, Marc Carlson <mcarlson at fhcrc.org> wrote: > Hi Peng, > > I am not completely clear from your post what you want. ?But most of our > annotation

Dear R-helpers: thank your for your attention. i am a newer to R and i am doing some protein category classification based on the amino acid sequence.while i have some questions urgently. 1. any packages for analysis amino acid sequence 2. given two sequences "AAA" and "BBB",how can i combine them into "AAABBB" 3. based on "AAABBB",how can i get some

Dear R users, I have a matrix composed of lists: m <- matrix( list(), nrow=1, ncol=3 ) m[[ 1, 1 ]] <- list("A", "B") m[[ 1, 2 ]] <- list("A", "C") m[[ 1, 3 ]] <- list("A", "B") and want to get the sub-matrix where cells contain "B". But m[ , "B" %in% m[ 1, ], drop=F ] as well as m[ , "B"

Un saludo a todos. Es posible que con el asunto no quede claro lo que quiero. Para eso añado una captura. Dispongo de 3 variables (dos discretas y una continua) y me interesaría sacar la media tanto del grupo como de los subgrupos. Esta creo que es la segunda vez que escribo preguntando algo parecido. En la primera me hablasteis de tapply, pero con este comando sólo sé obtener la media de una de

Running Tomb Raider on Nouveau I found some flicker caused by ignoring precise modifiers on variables inside Nouveau. This series add precise/invariant handling to TGSI, which can be then used by drivers to disable certain unsafe optimisations which may otherwise alter calculations, which depend on having the same result across shaders. This series fixes this bug in Tomb Raider and one CTS test