similar to: Make scripts during package installation?

Dear all, I am a PhD student working with Affymetrix HGU133atag array for analyzing the Latin square experiment. I was trying to generate gene expression index for hgu133atag array for PDNN model. While extracting the chiptype specific data structure, I got the following error- > library(affypdnn) Loading required package: affy Loading required package: Biobase Welcome to Bioconductor

Dear all, When running function 'testQAReport()', which uses function 'buildVignettes()' to create a pdf-file I get the following error: > source("testQAReport.R") > testQAReport() Error in .get_package_metadata(pkgdir) : Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing. Since I did not get this error in earlier versions of R, could you

I am trying to decide on a name for a directory where I will put some extra package tests. The main motivation for this is the need to limit the package test time on CRAN. That is, these are tests that could be in the tests/ directory and could be run on CRAN, but will take longer than CRAN likes. Scanning through names currently being used in packages on CRAN I see a large number of

An updated version 1.1.1 of xlsReadWrite has been submitted to cran. Currently the cran version is still 1.0, but you can download the updated version already here: http://treetron.googlepages.com. xlsReadWrite is a package which allows you to natively read and write Excelfiles (windows only). Changes from xlsReadWrite 1.0.0 to 1.1.1 -> added colClasses argument ("rowname",

The Asterisk.org development team has released Asterisk versions 1.4.20-rc3 and 1.6.0-beta9. These releases are intended to encourage community testing to improve the quality of the upcoming 1.4.20 and 1.6.0 releases. The testing process has proven extremely useful and we would like to thank everyone who has participated. Please help continue the effort. Any issues with test releases

The Asterisk.org development team has released Asterisk versions 1.4.20-rc3 and 1.6.0-beta9. These releases are intended to encourage community testing to improve the quality of the upcoming 1.4.20 and 1.6.0 releases. The testing process has proven extremely useful and we would like to thank everyone who has participated. Please help continue the effort. Any issues with test releases

LLVMers, On the way to resolving bug 122, I am committing my SymbolTable rewrite. If you are working on anything that uses the SymbolTable, I suggest you read the documentation in include/llvm/SymbolTable.h. The changes I've committed reduce the use of Type::TypeTy. This static member will go away in the future, so please do not propagate new code that uses it. There is no reason to use it

Hello, I wonder if it is unwise to name a bundle the same as one of its packages. For instance, I now have a huge package called 'aroma' that I basically want to split up in several smaller packages, say 'aroma.core', 'aroma.io', 'aroma.explore', 'aroma.trial', 'aroma.deprecated' etc, which simplifies maintenance but also the overview. For

I don't know if this is the correct forum to ask the following question; however, when I search the aroma.affymetrix discussion group, it suggested that I should posted the question to r-help. Here it goes. I followed the instructions on aroma.affymetrix trying to install the packages; following are the steps: > install.packages(c("R.oo", "R.utils"),

Hi. Is it possible to make gpr from raw? library(aroma) #read gpr file gpr <- GenePixData$read("gpr123.gpr", path=aroma$dataPath) # gpr -> raw raw <- as.RawData(gpr) # raw -> ma ma <- getSignal(raw, bgSubtract=FALSE) ma.norm <- clone(ma) #normalization normalizeWithinSlide(ma.norm, "s") #ma -> raw raw2 <- as.RawData(ma) I want to make gpr data from

I'm having some trouble getting my shell script to work. I've checked out the Intro to R Manual and a host of other websites, but I still can't get the script to work when I submit the job to the cluster. Here is my main R code: ##Load Libraries ##... ## Load Time Data Args <- commandArgs(trailingOnly = TRUE); print(Args); timeDat <- read.flowSet(files=NULL, path=Args[1]);

> On Mar 23, 2016, at 5:54 PM, Matthias Braun via llvm-dev <llvm-dev at lists.llvm.org> wrote: > > Let's move this to llvm-dev. I should describe my goals/motivation for the work I have been putting into the llvm-testsuite lately. This is how I see the llvm-test-suite today: > > - We provide a familiar cmake build system so people have a known environment to tweak

Okay, I was intrigued, tried it and it turns out you can add make a patch for basic google benchmark support in 40 minutes: http://reviews.llvm.org/D18428 <http://reviews.llvm.org/D18428> So there is a base now if someone wants to write benchmarks for it in the future. - Matthias > On Mar 23, 2016, at 6:00 PM, Mehdi Amini via llvm-dev <llvm-dev at lists.llvm.org> wrote: >

Hi, I'm trying to write a function in C for implementation with .Call. When compiling using R CMD SHLIB characters seem to be added to the function name. Here's the complete C code from the file summariseMCMC.c: #include<R.h> #include<Rdefines.h> #include<Rinternals.h> void summariseMCMC(SEXP data) { PROTECT(data=AS_NUMERIC(data)); UNPROTECT(1); } Then

Let's move this to llvm-dev. I should describe my goals/motivation for the work I have been putting into the llvm-testsuite lately. This is how I see the llvm-test-suite today: - We provide a familiar cmake build system so people have a known environment to tweak compilation flags. - Together with the benchmark executable we build a .test file that describes how to invoke the benchmark and

FYI, I'm sure the following is a temporary issue, but in case it slips through, I want to raise it here. On Windows 7 64-bit, running Rcmd check on R devel gives: * using R version 2.13.0 Under development (unstable) (2011-02-11 r54330) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'aroma.core/DESCRIPTION' ... OK * this is

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Hi List, I'm trying to install aroma.affymetrix, which depend on many packages, affyio is one of them. The task is done on 32-bit Linux without problem. The same task was done on Solaris 9 with R-2.5.1 without problem. Following is the error message when installation affyio. I did try to put a file stdint.h I got from the web in the path, but got more error messages. Jun root@biostatsun1

On Mon, 21 Jun 2004, Vladimir Merzliakov wrote: > Is it ok sending this results for FreeBSD5.1 at daily/weekly based to this > mail list? A better list for it would be the llvmbugs list for now. I beginning to think that we need a new test results mailing list. We have 3 instances of the nightly tester going now (x86/linux, sparc, ppc) and may have more in the future. The nightly tester

Dear list members, I am trying to use dump.frames to debug some code that i run non interactively. I use the following method: dump.frames.mod = function() { dump.frames(dumpto = 'test', to.file = TRUE) quit(save = 'no', status = 10) } options(error = dump.frames.mod) Is there any way to acess the content of the global environment from the *.rda file created in