Displaying 20 results from an estimated 2000 matches similar to: "R_SVN_REVISION breakage on current R trunk."
2017 Feb 20
1
another fix for R crashes under enable-strict-barrier, lto, trunk@72156
On 2nd thought, I think a better fix to the segfault is something like this:
--- a/src/main/memory.c
+++ b/src/main/memory.c
@@ -3444,6 +3444,8 @@ R_xlen_t (XTRUELENGTH)(SEXP x) { return XTRUELENGTH(CHK2(x)); }
int (IS_LONG_VEC)(SEXP x) { return IS_LONG_VEC(CHK2(x)); }
const char *(R_CHAR)(SEXP x) {
+ if(!x)
+ error("de-referncing null. Check the validity of your data.");
2012 Mar 22
0
Thai vignette, cross-compile for Mac OS X, universal/multiarch (Fwd: Mac OS X builds of CelQuantileNorm, vcftools/samtools/tabix, and snpStats)
FYI.
There is a Thai vignette - and it went a lot further doing some Thai text
processing in R, than the earlier Chinese/Tibetan/LiangshanYi/Arabic vignette,
which was in reality just Chinese + Cairo graphics.
Managed to cross-compile an R package for Mac OS X from Linux; and it seems to
be working. See screenshots below. I'd be interested to know if there are less
obvious bugs; however
2005 Oct 24
0
Rgnome depends on obsolete components libglade/libxml (PR#8248)
On Mon, 2005-10-24 at 17:14 +0100, Hin-Tak Leung wrote:
> Peter Dalgaard wrote:
> > hin-tak.leung at cimr.cam.ac.uk writes:
> >
> >
> >>Full_Name: Hin-Tak Leung
> >>Version: R 2.2.0
> >>OS: x86 linux
> >>Submission from: (NULL) (131.111.126.242)
> >>
> >>
> >>Rgnome depends libglade 0.x and libxml 1.x .
>
2015 May 17
0
That 'make check-all' problem with the survival package
------------------------------
On Sat, May 16, 2015 2:33 PM BST Marc Schwartz wrote:
>
>> On May 16, 2015, at 6:11 AM, Hin-Tak Leung <htl10 at users.sourceforge.net> wrote:
>>
>>
>>
>> ------------------------------
>> On Sat, May 16, 2015 8:04 AM BST Uwe Ligges wrote:
>>
>> Not sure why this goes to R-devel. You just could have asked
2005 Nov 04
2
Classification Trees and basic Random Forest pkg using t ree structures in C
> From: Hin-Tak Leung
>
> Izmirlian, Grant (NIH/NCI) wrote:
> <snipped>
> > The only interesting feature is that the tree structure has been
> > implemented in C. Its a neater way to carry stuff around and I am
> > guessing would make future implementation easier.
> >
> > Because of its inherent redundancy from the users standpoint, it
> >
2015 May 16
2
That 'make check-all' problem with the survival package
------------------------------
On Sat, May 16, 2015 8:04 AM BST Uwe Ligges wrote:
>Not sure why this goes to R-devel. You just could have asked the
>maintainer. Terry Therneau is aware of it and promised he will fix it.
>
The quickest fix is to add cmprsk to the recommended list , and that's is an R-devel issue.
>On 16.05.2015 07:22, Hin-Tak Leung wrote:
>> 'make
2007 Oct 07
1
R 2.6.0 S4 data breakage, R _data_class(), class<-, etc.
Hi,
(somebody would probably yell at me for not checking 2.6.0rc,
for which I can only apologize...)
Our R package (snpMatrix in
http://www-gene.cimr.cam.ac.uk/clayton/software/) is broken rather badly
in 2.6.0 ; I have fixed most of it now so a new release is imminent;
but I'd like to mention a few things, mostly to summarize my experience
and hopefully the 'writing R extensions'
2011 Apr 01
0
Fw: Re: core Matrix package segfaulted on R CMD check --use-gct
repost from the subscribed address...
--- On Fri, 1/4/11, Hin-Tak Leung <htl10 at users.sourceforge.net> wrote:
> --- On Wed, 30/3/11, Douglas Bates
> <bates at stat.wisc.edu>
> wrote:
>
> > I isolated the problem and tested then committed a
> fix. I
> > am going to
> > ask Martin to upload the new release as I have gotten
> out
> > of sync
2005 Oct 24
6
Rgnome depends on obsolete components libglade/libxml (PR#8247)
Full_Name: Hin-Tak Leung
Version: R 2.2.0
OS: x86 linux
Submission from: (NULL) (131.111.126.242)
Rgnome depends libglade 0.x and libxml 1.x .
They are no longer shipped with Redhat EL4.
(I know they are still in fedora core 4).
Just a wish-list.
2015 Jan 08
0
New version of Rtools for Windows
On Thu, Jan 8, 2015 at 10:48 AM, Hin-Tak Leung
<htl10 at users.sourceforge.net> wrote:
>
> The r.dll crash is easy - you need to be using gcc-ar for ar, and gcc-ranlib for ranlib. I also posted a patch to fix the check failure for stack probing, as lto optimizes away the stack probing code, as it should.
>
> yes, lto build's speed gain is very impressive.
>
>
I
2011 Oct 22
0
patch to add cairo support to Sweave (Re: Sweave, cairo_pdf, CJK, ghostscript)
It was as easy as I thought it was half a day ago - here is a patch against R trunk to add cairo support to the Sweave driver, an example Sweave input, and the resulting output. A few more notes:
- obviously the documentation needs to be updated... a bit more work to do.
- some check to make sure "cairo" and "pdf" are not both set would be nice, as well as checking
2006 Jan 27
1
rbind/cbind unimplemented for raw (RAWSXP) types. (PR#8529)
Full_Name: Hin-Tak Leung
Version: R 2.2.1
OS: x86_64-redhat-linux-gnu
Submission from: (NULL) (131.111.186.92)
rbind/cbind is unimplemented for raw (RAWSXP) types.
I have a working patch implementing the functionality,
to follow.
--please do not edit the information below--
Version:
platform = x86_64-redhat-linux-gnu
arch = x86_64
os = linux-gnu
system = x86_64, linux-gnu
status =
major
2015 Jan 08
1
New version of Rtools for Windows
Oh, I forgot to mention that besides setting AR, RANLIB and the stack probing fix, you also need a very up to date binutils. 2.25 was out in december. Even with that , if you linker's default is not what you are compiling for (i.e. a multiarch toolchain), you need to set GNUTARGET also, i.e. -m32/-m64 is not enough. Some fix to autodetect non-default targets went in after christmas before the
2015 Feb 02
0
updated R-cairo bridge, official R-3.1.*-mavericks.pkg crippled, snpMatrix 1.19.0.20
The windows replacement is
R-library-grDevices-libs-winCairo_20150122.zip
in
http://sourceforge.net/projects/outmodedbonsai/files/R/
The cairo replacements are just two bundles, windows or OS X - containing
replacements for R 2.15.3, 3.0.3 and 3.1.2. You just extract the relevant one
for your R version.
The windows builds of R packages snpStats x.x.x.8 and snpMatrix 1.19.0.20
were done with
2007 Jan 10
2
wine and build difference between R.2.4.0 and R 2.4.1 windows binaries?
Does anybody (most probably the core team) know if there is
any difference in how the official 2.4.0 and 2.4.1 binaries are
built?
Problem is, 2.4.0 loads with the wine (I tried a few recent
versions, and also used 2.3.x under wine from time to time),
but 2.4.1 won't.
Thanks.
Hin-Tak Leung
2005 Oct 24
0
Rgnome depends on obsolete components libglade/libxml (PR#8249)
On Mon, 2005-10-24 at 19:15 +0100, Hin-Tak Leung wrote:
> Marc Schwartz (via MN) wrote:
> > On Mon, 2005-10-24 at 17:14 +0100, Hin-Tak Leung wrote:
> >
> >>Peter Dalgaard wrote:
> <snipped>
> >>>You mean get it upgraded to xml2 and glade2? Patches would likely be
> >>>accepted...
> <snipped>
> >
> > According to the R
2015 Jan 19
3
[PATCH] Makefile: add support for git svn clones
On 19/01/2015 4:13 PM, Nathan Kurz wrote:
> On Mon, Jan 19, 2015 at 1:00 PM, Felipe Balbi <balbi at kernel.org> wrote:
>> I just thought that such a small patch which causes no visible change to
>> SVN users and allow for git users to build R would be acceptable, but if
>> it isn't, that's fine too.
>
> Felipe ---
>
> It would appear that you are
2006 Mar 08
2
Wishlist - Give R a name that shows up in search engines ...
From: Dirk Eddelbuettel
>
> On 7 March 2006 at 10:55, Hin-Tak Leung wrote:
> | I have given up on "R" with any topic on Google quite some time ago
> | (because bits from fragmented postscript/pdf files show up, for
> | example) - but using "r-devel" with topic normally gives me enough.
> | YMMV.
>
> Nobody seems to have mentioned the RSiteSearch()
2006 Jul 31
1
building windows packages under wine/linux and cross-compiling.
Had some fun today, and thought it might be a good idea to share
and possibly for inclusion to R/src/gnuwin32/README.packages .
Wine/linux : while R, ActiveState Perl, mingw all works alright under
wine, the blocking issue is Rtool's cygwin dependency. forking
(as much of make and sh is forking sub-processes)
on posix-on-win32-on-posix currently doesn't work.
2007 Mar 29
1
zlib+shlib issue with the official EL4 R binary
Hi,
I have got a curious issue with an R package which uses zlib, against
the official binary here:
http://cran.r-project.org/bin/linux/redhat/el4/i386/R-2.4.1-1.rh4AS.i386.rpm
on a Redhat EL4 i686 system.
The problem is that at the end of reading a gzip'ed file within my
C code, gzgetc() returns -1 (no more to read or error) but
gzeof() doesn't return true. Now one can probably jump to