Displaying 20 results from an estimated 8000 matches similar to: "G-test function in the stats package or on CRAN?"
2001 Sep 20
0
G-test : log-likelihood ratio test
I've written a g.test() aka log-likelihood ratio test function for my
opwn use. It's something I've seen requested (and looked to find
myself) on this list a few times.
It has the same basic syntax as chisq.test().
It does both goodness of fit tests and tests of independence.
Yates' and Williams' corrections are implemented.
I've put some examples from Sokal & Rohlf
2008 Dec 01
2
[BioC] BioC 2.3 standard installation
I always followed http://cran.r-project.org/bin/linux/ubuntu/ to install R
on Ubuntu 8.1. I had no errors before!
> install.packages("XML")
Warning in install.packages("XML") :
argument 'lib' is missing: using '/usr/local/lib/R/site-library'
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
trying URL
2014 Feb 09
0
Hurd boot difficulties.
I am working with multiboot module "mboot.c32". I have had luck using it to
boot NetBSD and the Hurd kernel. The problem with booting the Hurd kernel
is apparently connected to the extended syntax passed along to it by grub.
Grub passes Hurd kernel approximately 4 files, some of which are modules,
and another ten (or so) boot arguments, which correspond to those modules
and kernel. The
2018 Jan 22
0
How to address the following: CRAN packages not using Suggests conditionally
Dear colleagues, dear members of the R Core Team,
This was an issue raised by Prof. Brian Ripley and sent privately to all
developers of CRAN packages that suggest Bioconductor packages (see
original message below). As mentioned in my message enclosed below, it
was easy for me to fix the error in examples (new version not submitted
to CRAN yet), but it might turn into a major effort for the
2013 Jan 10
3
[LLVMdev] Porting LLVM, clang et al. to GNU/Hurd
Hi!
At night, when having my GNU Hurd maintainer hat on, I'm currently
working on porting LLVM, clang et al. to x86-class systems using the GNU
Hurd as their kernel, <http://www.gnu.org/software/hurd/>.
In the following, I'll just use LLVM to refer to the whole suite of
tools.
To some extent, LLVM already works on GNU/Hurd; thanks for constructing
it in a portable fashion. From
2006 Jan 05
1
Pb with agrep()
Happy new year everybody,
I'm getting the following while trying to use the agrep() function:
> pattern <- "XXX"
> subject <- c("oooooo", "oooXooo", "oooXXooo", "oooXXXooo")
> max <- list(ins=0, del=0, sub=0) # I want exact matches only
> agrep(pattern, subject, max=max)
[1] 4
OK
> max$sub <- 1 # One allowed
2018 Nov 29
2
apt.llvm.org has the wrong binaries/headers for llvm-toolchain-xenial-7
It appears that there was an out-of-band patch from Samuel Thibault:
https://salsa.debian.org/pkg-llvm-team/llvm-toolchain/blob/7/debian/patches/D54378-hurd-triple.diff
Although the patch was approved here https://reviews.llvm.org/D54378
Is this patch going to land in 7.0.1 or 8?
kristopher
> Here's further proof:
>
> wget
>
2006 Aug 29
2
Bioconductor installation errors
Hello,
I follow the Bioconductor instruction (http://www.bioconductor.org/download
<http://www.bioconductor.org/download> ) to install Biocoductor, there have
some errors:
/usr/lib/R/bin/SHLIB: line 115: make: command not found
chmod: cannot access `/usr/local/lib/R/site-library/affyio/libs/*': No such
file or directory
ERROR: compilation failed for package 'affyio'
**
2000 Dec 27
2
patch to support hurd-i386
Hi,
here's a patch so that ssh also supports hurd-i386. Thanks for
incorporating. The patch comes from Robert Bihlmeyer <robbe at orcus.priv.at>.
> openssh 2.2.0p1-1.1 does not build on the Hurd. The appended patch
> fixes that. Changes in detail:
> * PAM is not (yet?) supported, so the PAM dependencies are only put into
> the control file on architectures != hurd-i386.
2018 Jan 22
0
How to address the following: CRAN packages not using Suggests conditionally
Thanks a lot, I?aki, this is a perfect solution! I already implemented
it and it works great. I'll wait for 2 more days before I submit the
revised package to CRAN - in order to give others to comment on it.
Best regards,
Ulrich
On 01/22/2018 10:16 AM, I?aki ?car wrote:
> Re-sending, since I forgot to include the list, sorry. I'm including
> r-package-devel too this time, as it
2018 Feb 14
1
[PATCH] inspect: use check_tests also for detecting Hurd
Even though the list of checks is very short, at least this migrates
from imperative checks to a "declarative" one.
There should be no behaviour change, other than using os-release if it
contains all the needed information.
---
daemon/inspect_fs_unix.ml | 19 ++++++++++++-------
1 file changed, 12 insertions(+), 7 deletions(-)
diff --git a/daemon/inspect_fs_unix.ml
2014 Mar 27
3
[Bioc-devel] Conflicting definitions for function redefined as S4 generics
On 03/27/2014 02:13 AM, Ulrich Bodenhofer wrote:
> I fully agree, Michael, that this would be a great thing to have! I have
> often wondered why R and the standard packages are still sticking so
> much to the old-style S3 flavor though S4 is part of standard R. I
> acknowledge that backward compatibility is important, but, as far as I
> got it, redefining a function or S3 generic as
2001 Jul 22
1
[patch] GNU/Hurd compatibility patches
Hi,
These patches are from Robert Bihlmeyer to make ssh build on Hurd. If
you have queries about them, I suggest contacting
debian-hurd at lists.debian.org.
Cheers,
Matthew
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2001 Jul 23
1
forwarded message from mouring@etoh.eviladmin.org
On Mon, Jul 23, 2001 at 12:49:14AM +0100, Matthew Vernon wrote:
> ------- start of forwarded message -------
> From: <mouring at etoh.eviladmin.org>
> To: Matthew Vernon <matthew at empire.ucam.org>
> cc: <openssh-unix-dev at mindrot.org>
> Subject: Re: [patch] GNU/Hurd compatibility patches
> Date: Sun, 22 Jul 2001 12:39:32 -0500 (CDT)
>
>
> We
2001 Jan 04
0
patch for the HURD
This is a small/trivial patch to get HURD to _compile_ (I haven't gotten
PRNG to work yet) openssh. All it does is define MAXHOSTNAMELEN in
defines.h if it isn't already defined (there may need to be a library
loaded first, or you may want to incorporate that patch into canohost.c
instead of defines.h). Anyway, small patch for canohost.c and defines.h
because HURD doesn't use
2006 Mar 30
2
DO NOT REPLY [Bug 3646] New: rsync: connection unexpectedly closed (3207118 bytes received so far) [generator]
https://bugzilla.samba.org/show_bug.cgi?id=3646
Summary: rsync: connection unexpectedly closed (3207118 bytes
received so far) [generator]
Product: rsync
Version: 2.6.6
Platform: x86
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P3
Component: core
AssignedTo:
2004 May 17
0
Bioconductor 1.4 released
Greetings!
The Bioconductor core group would like to announce the 5th release of
Bioconductor, version 1.4. There are many new packages as well as
several major upgrades and fixes in older packages, and users are
encouraged to upgrade existing tools and check out the new packages.
Release 1.4 is intended to be operated with R version 1.9.x, which can
be obtained at CRAN
2014 Dec 02
0
[PATCH 2/5] inspect_os: Add support for detecting OpenBSD
Signed-off-by: Nikos Skalkotos <skalkoto@grnet.gr>
---
src/guestfs-internal.h | 1 +
src/inspect-fs-unix.c | 110 +++++++++++++++++++++++++++++++++++++++++++++----
src/inspect-fs.c | 12 ++++++
3 files changed, 116 insertions(+), 7 deletions(-)
diff --git a/src/guestfs-internal.h b/src/guestfs-internal.h
index 33d28f5..c8dd084 100644
--- a/src/guestfs-internal.h
+++
2014 Dec 03
1
[PATCH 1/4] inspect_os: Add support for detecting OpenBSD
Signed-off-by: Nikos Skalkotos <skalkoto@grnet.gr>
---
src/guestfs-internal.h | 1 +
src/inspect-fs-unix.c | 106 +++++++++++++++++++++++++++++++++++++++++++++++--
src/inspect-fs.c | 12 ++++++
3 files changed, 116 insertions(+), 3 deletions(-)
diff --git a/src/guestfs-internal.h b/src/guestfs-internal.h
index 33d28f5..c8dd084 100644
--- a/src/guestfs-internal.h
+++
2008 Jul 15
5
counting number of "G" in "TCGGGGGACAATCGGTAACCCGTCT"
Any better solution than this ?
sum(strsplit("TCGGGGGACAATCGGTAACCCGTCT", "")[[1]] == "G")
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