similar to: R CMD build error with data files

Hi there, I just tried to install the package prabclus on a computer running Ubuntu Linux 9.04 using install.packages from within R. This gave me a message: Warning message: In install.packages("prabclus") : package ?prabclus? is not available I tried to do this selecting two different CRAN mirrors (same result) and with other packages (installing them works fine). Looking up the

Dear list, I try to update the prabclus package. R CMD check works nicely, no warnings, good results in all tests. However, building the package fails: ginkgo:/disk5/home/chrish/RAusw/libsrc R CMD build prabclus * checking for file 'prabclus/DESCRIPTION' ... OK * preparing 'prabclus': * checking whether 'INDEX' is up-to-date ... OK * removing junk files * building

Hi I have a large dataset, containing a wide range of binary variables. I would like first of all to compute a jaccard matrix, then do a PCA on this matrix, so that I finally can do a hierarchical clustering on the principal components. My problem is, that I don't know how to compute the jaccard dissimilarity matrix in R? Which package to use, and so on... Can anybody help me? Alternatively

Dear R users, I'm interested in measuring the stability of a heirarchical clustering, of the overall clustering and finding sub clusters (from cutting the heirarchical clustering at different levels) which demonstrate stability. I saw some postings on the R help from a while back about bootstrapping for clustering (using sample and generating a consesus tree with a web based tool CONSENSE)

Dear Listers, I emailed the list a few days ago about how to bootstrap a community matrix (species by sites) and get a consensus tree with node support. A friend pointed out that a similar question remained unanswered in 2004. I wish to re-word my question: is anyone aware of a package / method to obtain a majority-rule consensus tree from x distance matrices ? Is anyone using R to generate

Dear list, (also sent to Roger Bivand, but perhaps somebody of you can help me also) I am trying to use package spdep for fitting an SAR model with errorsarlm. However, I am not sure how to make a valid nb object out of my neighborhood. As far as I have seen, there is no documentation for nb.object. I have done the following: class(pschmid$nb) <- "nb" # pschmid is a prab object as

thanks you AKi for alway responding! >> Pigeonhole download page has links for extdata plugin up to v0.4 but >> nothing more and no link to the master repository >> >> https://pigeonhole.dovecot.org/download.html >> >> I want to use with dovecot 2.3.2rc1 but v0.4 won't compile with it. > > Seems to need v0.5 for it. What are you using it for? For a

On Thu, 2015-08-06 at 16:10 +0200, Stephan Bosch wrote: > Since the extdata plugin is not part of the normal Debian packages (not > afaik anyway), you likely compiled and installed the extdata plugin > manually in the past while using Dovecot 2.1. Do that again, but use > this repository: http://hg.rename-it.nl/pigeonhole-0.4-sieve-extdata/ I'm just trying to install this now,

Does R have the capability to perform tests for the need of clustering analysis (e.g., in prabclus)? I am using panel data with two-way fixed effects but am unsure about whether I should be using a cluster option as well to estimate my model.-- View this message in context: http://r.789695.n4.nabble.com/Tests-for-the-need-of-cluster-analysis-tp3488097p3488097.html Sent from the R help mailing

dir("inst/extdata/") dir("./inst/extdata/") dir("inst/extdata") works all fine, listing the directory content. but: unzip(tmp[1],exdir = "inst/extdata/") Error in unzip(tmp[1], exdir = "inst/extdata/") : 'exdir' does not exist unzip(tmp[1],exdir = "./inst/extdata/") Error in unzip(tmp[1], exdir = "inst/extdata/") :

Hi, On a new install-from-source with Dovecot 2.2.16rc1, Piegeonhole 0.4.6 and a grab of the newest Extdata code, I confirmed basic Sieve functionality is working (made a simple sieve script with a test on message subject resulting in a fileinto action). But I cannot get Sieve to see Extdata or Extprograms. sievec reports "Warning: sieve: ignored unknown extension

I'm putting together an R package. I would like to show example code in the vignette, where example data files (included in the package) are used to generate an (example) output file. I read about using example data in Hadley Wickham's post ( http://r-pkgs.had.co.nz/data.html), and believe I should keep my example data as raw data, as it must be parsed to generate the output. So, I

[Env: R 2.12.2, WinXp] In a vignette for the vcdExtra package, I had a text file, tv.dat under data/, that I used in the vignette as <<tv1,results=verbatim>>= tv.data<-read.table(system.file("data","tv.dat",package="vcdExtra")) head(tv.data,5) @ I was told that this now generates a warning for non-Rdata files in R CMD check. But I'm now

Dear list, R CMD check on my updated package now generated the following error: "LaTeX errors when creating DVI version. This typically indicates Rd problems." But the Rd files (and everything else) were checked as "OK" (I removed the problem about which I asked the list some hours ago, but answers are still appreciated because I rather created a rough workaround than

Are the dovecot environment variables mutable? I'd like to override like: set "${env.vnd.dovecot.username}" "someuser at example.org" Or better, I prefer to override %u Dovecot variable during the userdb lookup. Is either possible? PS, when Sieve does extdata lookups for username key, where does username come from? %u? Does an override as above change the dict

On Thu, 2015-08-06 at 09:49 +0200, Stephan Bosch wrote: > You have no debug symbols installed. Could you install dovecot-dbg > package and try again? Sorry, how's this: #0 sieve_validator_find_command_registration (valdtr=0xffffffff, command=0x7fc573c4bcd8 "extdata") at sieve-validator.c:309 No locals. #1 sieve_validator_register_command (valdtr=0xffffffff,

Dear, I am using the R package SNPRelate but I found an error when I run the following command. Do you know what might be the problem? Thanks in advance. > vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate") > snpgdsVCF2GDS(vcf.fn,"test.gds") Start snpgdsVCF2GDS ... Extracting bi-allelic and polymorhpic SNPs.

Dear list, I just tried to use the function cluster.stat in the package fpc. I just have a couple of questions about the syntax: cluster.stats(d,clustering,alt.clustering=NULL, silhouette=TRUE,G2=FALSE,G3=FALSE) 1) the distance object (d) is an object obtained by the function dist() on my own original matrix? 2) clustering is the clusters vector as result of one of the many clustering methods?

Hi, I'd like to ask about status of extdata plugin for sieve. The wiki page (http://wiki2.dovecot.org/Pigeonhole/Sieve/Plugins/Extdata) mentions versions for PigeonHole 0.2 and 0.3, but there seems to be no version for 0.4 and Dovecot 2.2. Is the plugin dead or is it planned to make version for Dovecot 2.2 (when time allows I guess)? Regards J.

Hi list, is there any direct way to obtain confidence intervals for the regression slope from lm, predict.lm or the like? (If not, is there any reason? This is also missing in some other statistics softwares, and I thought this would be quite a standard application.) I know that it's easy to implement but it's for explanation to people who faint if they have to do their own programming...