Displaying 20 results from an estimated 20000 matches similar to: "include a dataset in my package"
2009 Sep 19
3
Lattice: combine the same strip?
Hello R helpers,
I am producing a figure with dual strips, i.e., x~y | S1 + S2, where S1 and
S2 are two strips. For example, in figure 2.1 at
http://lmdvr.r-forge.r-project.org/figures/figures.html.
In this case, I would like to combine the the top strip, since all three
pictures in the same row have the same level based on the first strip. In
other words, instead of
| -- S11 -- | -- S11 -- |
2002 Feb 22
3
storing large data.frame's
I am new on R, so I have a maybe naive question:
if I have many large data.frames and I use only one or two per session,
what's the best way?
If all are stored in the actual .Rdata, the system gets slow.
On the other hand, I wouldn't like to make a separate package for the
data.
Should I save it with save() and then remove it with rm() ?
Could I reload it then?
Thanks for suggestions
2011 May 16
3
R CMD check: no visible binding for global variable
Dear All,
I have built a package which has a data.frame "annotIndex.rda
in its "data" folder.
I am using this data frame within two functions in my package.
Though my package works fine, yet when I do a
R CMD check
to my package I get the following two notes
get.affy.ensembl: no visible binding
2009 Sep 15
2
Putting together a constantly evolving package
Hi all,
I'm putting together some common code + data into a custom package,
everything is working out fine, but the ``R CMD INSTALL MyPackage``
call seems to take a particularly long time in the "**data" step:
$ R CMD INSTALL MyPackage/
* installing to library ?/Library/Frameworks/R.framework/Resources/
library?
* installing *source* package ? MyPackage? ...
** R
** data
2001 Feb 06
3
RWin 1.2.1: Can't access sample datasets, e.g. MASS
I'm pretty sure I'll feel like [more of] an idiot but...
Using Rgui working in a fresh, blank directory.
> require(MASS)
Loading required package: MASS
[1] TRUE
> data(cabbages)
Warning message:
======> Data set `cabbages' not found in: data(cabbages) <=====
> ls()
[1] "last.warning"
> search()
[1] ".GlobalEnv" "package:MASS"
2007 Jan 04
2
memory limits in R loading a dataset and using the package tree
? stato filtrato un testo allegato il cui set di caratteri non era
indicato...
Nome: non disponibile
Url: https://stat.ethz.ch/pipermail/r-help/attachments/20070104/6e94ce08/attachment.pl
2008 Jun 11
1
how to save an updated dataset
I wrote a package which includes a number of genome sequencing project
statistics on the web like http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi. I
included some generic functions to summarize, plot, and update the tables
with the most recent version
data(lproks)
update(lproks)
[1] "lproks successfully updated, 7 new genomes added"
I usually save the dataset back to my package
2009 Jul 27
2
create dataset permanently in package (i.e. default or our own package)
Hi,
actually while opening R console and R commander we see some packages like
car and datasets. in this packages we have default datasets are available.
example: women and prestige like that. now i created a sales dataset
importing from excel, xml or text file. now i want to store that dataset
permanently in any one of the package like i mentioned above (car or
datasets). now i closed my R
2005 Jun 03
1
Creating datasets
RSiteSearch("creating datasets", restrict="doc") gives me R-exts.html as the
first hit...
I did pretty much the same thing you did and had no problem. In the data/
directory of the source package I only have the one .rda file and nothing
else. Did you try installing the package and test it before you run check?
Andy
> From: Jim Lemon
>
> Hi folks,
>
>
2009 Aug 06
1
Using 'field names' of a data.frame in a function
I may be doing this wrong! but I have a function which I have simplified a lot below. I want to pass some 'field names' of a data-frame to the function for it to then do some manipulation of.
Here's my code:
#build a simple dataset
mydataset = data.frame (
2009 Jul 28
5
Summarising Data for Forrest Plots
I tried to post this a few times last week and it seems to have got stuck somehow so I'm trying from a different email in the hope that works. If somehow this has appeared on the list 20 tiems and I never saw any of them I apologize ;-)
I'm basically an R-newbie. But I am VERY computer literate. But this has me stumped...
All the examples for using the rmeta package to create a
2011 Dec 06
1
warning for inefficiently compressed datasets
Hi,
Recently added to doc/NEWS.Rd:
'R CMD check' now gives a warning rather than a note if it finds
inefficiently compressed datasets. With 'bzip2' and 'xz' compression
having been available since R 2.10.0, there is no excuse for not
using them.
Why isn't a note enough for this?
Generally speaking, warnings are for things that are dangerous,
or unsafe,
2024 Oct 13
1
The RV coinertia coefficient to interpret multivariate analysis plots
Dear all community,
My issue is related to the R package (made4) that permits me to calculate
the RV coefficient of co-inertia. However, it is a theoretical question.
And if I am not mistaken, the list Usenet groups sci.stat.consult is not
currently active.
Let me explain briefly:
Through different microbiota datasets, I have plotted PCoA, db-RDA and
sPLS-DA using 3 different types of
2014 Jul 21
1
Licence for datasets in a R-package
Dear List,
I am building a R package which collects ecological data about plant
species from both remote (web) databases and locally stored rda files
(datasets): these "local rda files" are derived from publicly available
databases for which no "official" licenses are provided; I was told by the
creators of these databases that users can use such data provided that the
2003 Dec 11
1
packaging standards for rda files?
Dear everybody:
We used the fine foreign library to bring in an SPSS dataset that was
about 9 megabytes and I can squeeze it into a much smaller R object
using compression with
save(ndat, file="NatAnnES2000.rda", compress=T).
I can use load() to get the "ndat" dataframe back, that's all good as
far as I can see. If I put that file in the data subdirectory, then the
2020 Oct 24
3
Issue with data() function
I found an issue with the data() command this evening when working on the survival package.
1. I have a lot of data sets in the package, almost all used in at least one vignette,
help file, or test.? As a space saving measure, I have bundled many of them together,
i.e., the file data/cancer.rda contains 19 data sets, many of them small. The resulting
file (using xz compression) is quite a bit
2010 Oct 05
2
[LLVMdev] gold-plugin build errors
I tried to build the gold plugin and receive the errors posted below. I
checked out the gold plugin using "cvs -z 9 -d
:pserver:anoncvs at sourceware.org:/cvs/src co src," as documented on
llvm.org. Is that version bleeding edge and perhaps not stable?
The first errors have to do with the libtool version. I have libtool
2.2.6 on my system, which is what the README-maintainer-mode
2009 Oct 29
3
Trouble retrieving data (.xls) from folder on my computer.
Using gdata on windows and im having trouble to retrieve an excel file from a
folder on my computer.
This is my dummy:
R > download.file("http://people.su.se/~lundh/data/cpi_kpix.rda",
+ "cpi_kpix.rda")
R > URL <- "http://people.su.se/"
R > PATH <- "~lundh/data/"
R > FILE <- "cpi_kpix.rda"
R >
2013 Jul 12
2
vegan capscale 'subscript out of bounds' error
Hi list,
I am using the capscale function in vegan_2.0-7 to do a constrained
principal coordinates analysis, and I kept getting the following error
message:
Error in Y.r[, oo, drop = FALSE] : subscript out of bounds
I googled but I couldn't find an answer. Could anyone tell me why this
error msg and what to do?
Here is the command I used:
2010 Dec 29
1
Counting number of datasets and appending them
Hi there,
I have a question on how to read a bunch of dataset, assign each of the dataset to a matrix in the memory, and append them.
Suppose I have 20 dataset saved to different .rda files named gradeFileData1, gradeFileData2,...., gradeFileData20. And I would like to read them each into a dataset in the memory, then combine them. I wrote something like:
e1<-new.env(parent=.GlobalEnv)