similar to: S3 methods with full name in documentation?

Hello: What might be the problem generating messages like "Warning: missing text for item ... in \describe" with "R CMD check" and "R CMD install"? With the current version of "fda" on R-Forge, I get the following: Warning: missing text for item 'fd' in \describe Warning: missing text for item 'fdPar' in \describe

Dear all, I'm trying to build some fda objects using smooth.pos() from fda package. Here is what I try: >X <-c(0.4541139, 0.4802537, 0.5091228, 0.3894931, 2.1512258, >7.9301281, 62.3876109, 54.1168247, 67.8769904, 91.0670615, 20.0682440) >basis <- create.bspline.basis(c(-100, 100), 7, 5) >MDA.fdPar <- fdPar(basis, 2, 0.01) >MDA.fda.joint <-

Hello, All: What would you say is the best succinct reference to cite on use of generic functions, especially S3 generics? I want to add an appropriate citation on this to a forthcoming book in the Springer "useR!" series (discussing the use of the 'fda' package, which uses the S3 standard). Thanks, Spencer Graves

????? Thanks for the reply. On 2020-01-27 19:56, Abby Spurdle wrote: > Maybe I'm missing something really obvious here, but I was unable to > create a matrix out of POSIXct object(s). > Perhaps that deserves a separate discussion...? ????? Can you provide an example? ????? The standard matplot application that concerns me is with matplot(x, y, ...) where x has class Date or

This error can arise when getOption("width") is too small. 80 seems to be the limit for me with R-3.3.2 on Windows. Bill Dunlap TIBCO Software wdunlap tibco.com On Wed, Mar 8, 2017 at 10:28 PM, Spencer Graves <spencer.graves at prodsyse.com> wrote: > Hello: > > > I tried "debug(help)" with the problem mentioned below. It stopped > with a call to

Hi, from the man page ?methods, I expected to be able to build pairs (class,package) for a given S3 method, e.g., print, using attr(methods(print), 'info'). However all the methods, except the ones defined in base or S4 methods, get the 'from' value "registered S3method for print", instead of the actual package name (see below for the first rows). Is this normal

Dear List, This may be related to this email thread initiated by Ben Bolker last month: https://stat.ethz.ch/pipermail/r-devel/2011-July/061630.html In answering this Question on StackOverflow http://stackoverflow.com/q/7195628/429846 I noticed that `methods()` was not listing some S3 methods for `plot()` provided by the mgcv package. At the time I wanted to check the development version of R as

Hello, All: The CRAN checks for the "fda" package includes one error: The error most likely occurred in ... file.copy2 ... Error: unprotect_ptr: pointer not found Execution halted (http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian/fda-00check.html) The help page for "file.copy2" includes "\examples" with everything wrapped in

Hello: A call to help(..., help_type='text') fails with "package='fda": > install.packages('fda') > help(package='fda', help_type='text') Error in formatDL(nm, txt, indent = max(nchar(nm, "w")) + 3) : incorrect values of 'indent' and 'width' I have this wrapped inside "try" in

Hi all, I am setting up a new AD server with Samba 4.1.11 from the FreeBSD ports. I struggle with the internal DNS. I add a new CNAME record but it does not show up properly. I gave the AD domain a new DNS domain (domain.fda) and the server the name samba4.domain.fda. I am using the internal DNS, and a forwarder to a bind server in the same network. After the AD provision I have this here

Hi, All: What might cause "R CMD check" to report, "could not find function" for a function that has long been in the 'fda' package? Both Jim Ramsay in Ottawa, Canada, and I in San Jose, CA, get this same error. I replicated it with a fresh, anonymous checkout from R-Forge (svn checkout svn://svn.r-forge.r-project.org/svnroot/fda). With this, I did

Hello: ????? How can someone help me find and fix the following, contained in 00check.log on Debian for "https://github.com/JamesRamsay5/fda": NOTE Found the following files/directories: ? ?fdaMatlabPath.m? * checking for detritus in the temp directory ... OK ????? See: https://win-builder.r-project.org/incoming_pretest/fda_5.1.3_20200416_225207/Debian/00check.log ?????

Hello: What do you recommend I do to get past cryptic error messages from "R CMD check", complaining "No such file or directory"? The package is under SVN control, and I reverted to a version that passed "R CMD check", without eliminating the error. The "00install.out" file is short and bitter: cat: ./R/Copy: No such file or directory cat:

I hope that Marc doesn't mind, but I felt that part of his recent post was important enough to deserve it's own subject line rather then being lost in a 60-msg-long thread... On Sun, Jan 11, 2009 at 10:08 AM, Marc Schwartz <marc_schwartz at comcast.net> wrote: ... I strongly believe that the comments regarding R and the FDA are overly negative and pessimistic. The hurdles to

Dear R-devel, Recent versions of R CMD check have been flagging apparent S3 methods that are not registered in the NAMESPACE as such. In most situations this is very helpful. However, I have few cases in existing packages where we have unfortunately named functions using a "." in them that makes them appear as S3 methods when they are not. As there is no existing class

Yesterday I just noticed the new document on R and regulatory aspects for biomedical research posted at http://www.r-project.org/doc/R-FDA.pdf Coming from an institution that performs a large number of clinical trials for FDA and being an advocate of R myself, I have found that the following issues usually come up when discussing the use of R for FDA trials: 1. Most FDA submissions come down to

If a package defined an S3 generic and an S4 generic for the same function (so as to add methods for S4 classes to the existing code), how do I set up the namespace to have them exported? With import(stats) exportMethods(bigglm) importClassesFrom(DBI) useDynLib(biglm) export(biglm) export(bigglm) in NAMESPACE, the S3 generic is not exported. > methods("bigglm") [1] bigglm.RODBC*

I have a query after finding an error running Rtools on a Windows machine. I am trying to build an update to the R fda library using Rtools27 under Windows XP Pro. This is the current fda library on RForge: http://r-forge.r-project.org/projects/fda Following R CMD build, R CMD check produces the following error in 00Install.out: installing R.css in F:/work/RForge/fda.Rcheck make: ***

Dear list, It seems that S4 methods defined for an S3 'base' generic are not used in 'base' functions. This can be problematic when 'base' functions start with something like 'as.matrix'. ### START R code setClass("classA", contains = "matrix", representation(realData = "numeric")) setMethod("as.matrix",

Dear all, I asked this question on r-package-devel but Martin Maechler pointed out this was more suited on R-devel. So here it goes: per the manual, one should create and register both the S3 and a S4 method if one needs a method for an S4 class for a function using S3 dispatching. This is cumbersome, and not very optimal. I was wondering if there's a better way to do this. Currently I