similar to: R 2.15.0 alpha: R CMD check --as-cran / tools:::..check_package_CRAN_incoming() crash

Hello, I am having an issue with R CMD check with the nightly build of RC 2.3.0 (listed in the subject.) The problem is this warning: * checking if this is a source package ... WARNING Subdirectory 'src' contains: README _Makefile These are unlikely file names for src files. In fact, they are not source files, but I do not see any reason why they cannot be there, or why I need to

Hi, when I run R CMD check with flag --as-cran, the process hangs at stage: * checking CRAN incoming feasibility ... I am pretty sure it is a proxy issue. I looked at the check code in the tools package and it seems that the issue is in the local function `.repository_db()` (defined in `tools:::.check_package_CRAN_incoming()`), which eventually calls `url()` with argument

Jenny Coetzee <coetzeeJ at phru.co.za> writes: > thanks Loris > > you are bering so helpful! > > So, i have done what you explained, but the RDS package that runs > ?using or through? R is now just closing each time i open it. I have > googled and seen that i need to to the following: > > Tips: The recent updates to the Apple Mac OS (Sierra and High Sierra) >

Dear all, I've recently had some issues getting my package to successfully "check". This was on R-Forge, so it's not obvious for me to provide SessionInfo or the likes (if necessary, Stefan can chime in?). After some research (mainly by Stefan Theussler, driving force behind R-Forge), this turned out to be the root cause: On R-Forge, the version of R installed was the

thanks Loris you are bering so helpful! So, i have done what you explained, but the RDS package that runs ?using or through? R is now just closing each time i open it. I have googled and seen that i need to to the following: Tips: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like RDS Analyst, work. So sometimes RDS Analyst will not be

Hi. I'm on Windows 7 64-bit with latest R devel with and Rtools (2.16.0.1926). When I try to enable spell checking for 'R CMD check' by setting environment variable '_R_CHECK_CRAN_INCOMING_USE_ASPELL_' to 'true', I get: * checking CRAN incoming feasibility ...Warning in aspell(files, filter = "dcf", control = control, encoding = encoding, : The

Hello I am new to R, and am running a programme called RDS Analyst which uses R. When trying to open RDS i am getting the following message: JGR not installed. Attempting to install from CRAN? I am not sure if the issue is a Java one or an R one? I am working off a Mac using High Sierra Any help please..? thanks Jen Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations

Dear R-devel, I am writing a package that needs some C++ functions from an external SDK (Affymetrix fusion). The same functions are already compiled into another package (affxparser). Can I dynamically link to the compiled code in affxparser, rather than re-compiling these separately into my package? Not a lot of experience on this subject! Thanks, Charles

Hi Jenny, Jenny Coetzee <coetzeeJ at phru.co.za> writes: > Hello > > I am new to R, and am running a programme called RDS Analyst which > uses R. When trying to open RDS i am getting the following message: > JGR not installed. Attempting to install from CRAN? > > I am not sure if the issue is a Java one or an R one? > > I am working off a Mac using High Sierra

Hi, does someone else get this error message: Error in function (env) : could not find function "finalize"? I get an error when running examples in R CMD check (v2.6.0; session info below): > ### * invertMap > > flush(stderr()); flush(stdout()) > ### Name: invertMap > ### Title: Inverts a read or a write map > ### Aliases: invertMap > ### Keywords: file IO

Dear All, It seems that reference classes consume a lot of memory which became a problem for my rather extensive simulation. I prepared a small example. An instance of this minimal class uses about 20K on disk. rm(list=ls(all=TRUE)); MySmallClass = setRefClass("MySmallClass", fields = list( myField = "numeric" ), methods = list( initialize =

so, i use vpopmail to auth my users,but after upgrading from dovecot-0.99.14-r1 to dovecot-1.0_alpha5 and tweaking dovecot.conf i get this in the log : dovecot: Dec 15 12:12:11 Info: auth(default): client in: AUTH 1 PLAIN service=POP3 lip=81.xx.xx.xx rip=81.xx.xx.xx resp= dovecot: Dec 15 12:12:11 Info: auth(default): client out: CONT 1 dovecot: Dec 15 12:12:11 Info:

Loris, thank you thank you so much!!! do you know which CRAN mirror i select? There are loads - all related to various countries.. so appreciate the help Jenny Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations & Head of the Soweto Sex Worker Project Perinatal HIV Research Unit (PHRU) New Nurses Home Chris Hani Baragwanath Academic Hospital Soweto B: +27 11 989 9821 M:

I've found that the HTML help system started via help.start() requires all forward slashes in R_LIBS_USER otherwise the Packages page is corrupt/non-working. Note that by default R_LIBS_USER is set by R on startup. Example 1: With R_LIBS_USER=C:/Users/JohnDoe/R/win-library/2.10 > help.start() [and go to "Packages"] If nothing happens, you should open

> On 19 Mar 2015, at 19:45 , G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: > > On Thu, Mar 19, 2015 at 2:19 PM, Dan Tenenbaum <dtenenba at fredhutch.org> > wrote: > [...] > >> >> In github? ;-) >> > > Well, that's the thing. If github/cran is a read-only mirror, then should I > delete these versions from there, too? :) On CRAN not

Ok, so this is not a users-list, but i really don't know where to ask. Maybe a future openssh-unix-users at mindrot.org will take this kind of problems... :-) So, i'm trying to forward a POP3 connection over a SSH tunnel, using openssh-1.2.3 both on server and on client. My host is atlanta.rds.ro and the mailserver is mail.rds.ro. I did like this: ssh -L 110:mail.rds.ro:110 mail.rds.ro

On 19/03/2015 19:26, Duncan Murdoch wrote: > On 19/03/2015 2:55 PM, peter dalgaard wrote: >> > On 19 Mar 2015, at 19:45 , G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: >> > >> > On Thu, Mar 19, 2015 at 2:19 PM, Dan Tenenbaum <dtenenba at fredhutch.org> >> > wrote: >> > [...] >> > >> >> >> >> In github?

Hi, for 'affxparser' (Bioconductor), we needed a function to test if a certain package was loaded or not, but we did not want to load it if it wasn't, which is why we couldn't use require(). We came up with the following solution: isPackageLoaded <- function(package, version=NULL, ...) { s <- search(); if (is.null(version)) { s <-

I ran into this behaviour when accidentally running a line of code that I shouldn't have. When saving over an rds with an object that's not found, I would have expected saveRDS to not touch the file. saveRDS(iris, "test.rds") file.size("test.rds") #> [1] 1080 saveRDS(no_object_here, "test.rds") #> Error in saveRDS(no_object_here, "test.rds"):

I hardly know anything about the format used in (non-compressed) serialization/RDS, but hoping someone with more knowledge could give me some feedback; Consider two R processes running in parallel on the same unknown file system. Both of them write and read to the same RDS file foo.rds (without compression) at random times using saveRDS(object, file="foo.rds", compress=FALSE) and