Jenny Coetzee
2018-Feb-20 10:39 UTC
[R] JGR not installed. Attempting to install from CRAN...
thanks Loris you are bering so helpful! So, i have done what you explained, but the RDS package that runs ?using or through? R is now just closing each time i open it. I have googled and seen that i need to to the following: Tips: The recent updates to the Apple Mac OS (Sierra and High Sierra) have reorganized the ways apps, like RDS Analyst, work. So sometimes RDS Analyst will not be configured correctly and will not start (e.g., bouncing icon or no response to double clicking). Most of these relate to how Java works on the Mac. The first thing to try is to open the Terminal and type in : R CMD javareconf This asks R to check on the configuration of Java and try to get in sync with it. off website: http://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_Install BUT, when i do enter R CMD javareconf, i get the following error: Error: unexpected symbol in "R CMD? so what should i do now? thanks Jen Jenny Coetzee (PhD Candidate) Head of Prevention in Key Populations & Head of the Soweto Sex Worker Project Perinatal HIV Research Unit (PHRU) New Nurses Home Chris Hani Baragwanath Academic Hospital Soweto B: +27 11 989 9821 M: +27 84 761 1193 E: coetzeej at phru.co.za<mailto:coetzeej at phru.co.za> "Here's to the crazy ones, the misfits, the rebels, the troublemakers, the round pegs in the square holes ... the ones who see things differently - they're not fond of rules, and they have no respect for the status quo. ... You can quote them, disagree with them, glorify or vilify them, but the only thing you can't do is ignore them because they change things. ... They push the human race forward, and while some may see them as the crazy ones, we see genius, because the people who are crazy enough to think that they can change the world, are the ones who do." (Steve Jobs) On 20 Feb 2018, at 10:05, Loris Bennett <loris.bennett at fu-berlin.de<mailto:loris.bennett at fu-berlin.de>> wrote: Hi Jenny, Jenny Coetzee <coetzeeJ at phru.co.za<mailto:coetzeeJ at phru.co.za>> writes: Loris, thank you thank you so much!!! do you know which CRAN mirror i select? There are loads - all related to various countries.. so appreciate the help It shouldn't really matter, although I'd choose one that is geographically close. Occasionally there can be problems with HTTP vs. HTTPS, which can lead to spurious errors about a packages not being available for your version of R. Because R caches the mirror, if you run into any issues you might have to exit R and start again. Cheers, Loris -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universit?t Berlin Email loris.bennett at fu-berlin.de<mailto:loris.bennett at fu-berlin.de> [[alternative HTML version deleted]]
Loris Bennett
2018-Feb-20 11:52 UTC
[R] JGR not installed. Attempting to install from CRAN...
Jenny Coetzee <coetzeeJ at phru.co.za> writes:> thanks Loris > > you are bering so helpful! > > So, i have done what you explained, but the RDS package that runs > ?using or through? R is now just closing each time i open it. I have > googled and seen that i need to to the following: > > Tips: The recent updates to the Apple Mac OS (Sierra and High Sierra) > have reorganized the ways apps, like RDS Analyst, work. So sometimes > RDS Analyst will not be configured correctly and will not start (e.g., > bouncing icon or no response to double clicking). Most of these relate > to how Java works on the Mac. The first thing to try is to open the > Terminal and type in : R CMD javareconf This asks R to check on the > configuration of Java and try to get in sync with it. off website: > http://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_Install > > BUT, when i do enter R CMD javareconf, i get the following error: > Error: unexpected symbol in "R CMD? > > so what should i do now?I'll have to guess now, because I don't know much about Macs or Java. I assume there is something wrong with your java installation. You can check by writing the following in a terminal: java -version If the output of this isn't something sensible, then you probably need to (re-)install Java. Otherwise there is some information here (Point 3. "Configure Java for R"): https://www.ibm.com/support/knowledgecenter/en/SSPT3X_3.0.0/com.ibm.swg.im.infosphere.biginsights.install.doc/doc/install_install_r.html If that doesn't help (and probably even if it does) you should consider joining the RDS Users Group, if you haven't already: http://wiki.stat.ucla.edu/hpmrg/index.php/RDS_Analyst_Users_Group Cheers, Loris -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universit?t Berlin Email loris.bennett at fu-berlin.de
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