similar to: Unable to reload Rdoc

Dear list, I'm trying to suppress/redirect/squash the output from commands like install.packages, or download.file. The problem is that none of: sink(..., type="message"), sink(..., type="output"), capture.output, suppressMessages are quite doing the trick. Output gets written to the stderr stream, despite any combination of the above suppression commands. According to

Dear list, (this is a follow up from a previous query) Why does R CMD INSTALL write most of its messages to stderr? If it wrote to stdout, then we could capture its output within an R session when calling sink("stdout.txt", type="output") install.packages("MASS", type="source") sink() As it stands, the stderr messages can't be captured via

Hi I'm still exploring the R programming universe, so if this is being asked in the wrong place, or in the wrong way (e.g. too verbose or lacking in crucial detail or in the wrong format) please let me know I am trying to understand when the version constraints for packages which appear in the Imports field of a DESCRIPTION file are checked. Along the way I've hit a snag

Dear R-users, I am running R 2.10.1 under Windows XP Professional. Moreover, I run Java 5.0 and the RWeka package 0.4-1 and rJava 0.8-4. are successfully installed. I get two error messages while loading both packages. library(RWeka) Error in get(Info[i, 1], envir = env) : internal error -3 in R_decompress1 Error: package/namespace load failed for 'RWeka' 2:

Many thanks Duncan for the quick response. A bug is a relief in a way. I've been digging my way deeper into this (and learning more as I go) for several days now - but it is a diversion from (a diversion from) my main goal :-( Is there somewhere specific I should report or log the bug or will that happen from this mailing-list automatically? (I have seen the Bug Tracking link on the

Hello all, When I wanted to use package "foreach", I got the Error. That is: > library(foreach) Error in get(Info[i, 1], envir = env) : internal error -3 in R_decompress1 Error: package/namespace load failed for ‘foreach’ I am using R-2.14.2, 64 bit. Even I reinstalled R and package "foreach", the Error could not be fixed. Would you please to give me some advice? Thanks

Hi Duncan The difference is that in your call to loadNamespace, the versionCheck list has 3 components (name, op and version), whereas the documentation only mentions 2 (op and version). loadNamespace 'works' for me provided I add a third component to the list (even a nonsense one). What I haven't yet had the fortitude to do is track down through the code to see what the arguments

Hi guRus, i'm running R-2.15.1 and the R CMD CHECK output appears to have changed substantially, in that instead of pointing me to the offending functions or files, I get lots of 'call sequence' traces as below. I've been using R CMD CHECK for years & never seen anything like this before. This is on a pretty fresh OSX 10.8 Mountain Lion installation, where I installed R from

I'm trying to build an RPM of R 2.3.1 on a very old RedHat system (specifically, a ROCKS 3.3.0 cluster which is built on RH enterprise 3 (I think??)) I downloaded R-2.3.1.tgz from CRAN; downloaded the R.spec file cran.r-project.org/http://cran.r-project.org/bin/linux/redhat/SRPMS/ ; and ran rpmbuild -ba R.specs. Everything goes along fine until ... make[5]: Entering directory

Given the extremely simple package at https://github.com/jimhester/testUnload, which includes only one S3 method 'print.object' the following code produces a lazy load error from a new R session (R-devel r69801) install.packages("testUnload", repos = NULL) library("testUnload") unloadNamespace("testUnload") install.packages("testUnload", repos =

Hi Quite a few R packages are now available on GitHub long before they appear on CRAN, installation is simple thanks to devtools::install_github(). However, it seems to be common practice to keep the .Rd files (and NAMESPACE and the Collate section in the DESCRIPTION) in the Git tree, and to manually update it, even if they are autogenerated from the R code by roxygen2. This requires extra

I added a new data file, NLSY.RData, to a package that uses LazyData: Yes It passed R CRAN check and R CMD install worked w/o significant complaints. * installing to library 'C:/R/R-2.15.2/library' * installing *source* package 'heplots' ... ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading Warning: package 'nnet' was

Hi Duncan, Many thanks (yet again). With the hint given by your earlier email (viz that currently loadNamespace expects a 3rd component called name in the list that is used for the versionCheck argument) I had another look at what was going on with my toy examples yesterday evening. I'm still working on my issue, but thus far I have: 1) Confirmed that internal calls to loadNamespace

Hi, I am getting following error message while attaching 'rgl' package : > library(rgl) Error in get(Info[i, 1], envir = env) : internal error in R_decompress1 Can anyone tell me what should I do here? Regards, --------------------------------- 5, 50, 500, 5000 - Store N number of mails in your inbox. Click here. [[alternative HTML version deleted]]

I have installed rJava into my Windows 10 (64-bit) R instillation using the Tools > Install Packages command of my RStudion IDE. When I issued the R command in my R code library(rJava) I received the following error: library(rJava) Error: package or namespace load failed for ?rJava? in get(Info[i, 1], envir = env): lazy-load database 'C:/Users/John

Dear ComRades, I am having the "wrong MD5 checksums" error with every package I try to install. It happened with R 2.11.0, then I updated to R 2.11.1, same thing. sessionInfo() R version 2.11.1 (2010-05-31) i386-pc-mingw32 locale: [1] LC_COLLATE=Spanish_Spain.1252 LC_CTYPE=Spanish_Spain.1252 LC_MONETARY=Spanish_Spain.1252 [4] LC_NUMERIC=C

Hello, I am a bit over my head on this issue. My colleagues and I are running R off of our server. We all have admin rights and prior to yesterday we all had our own libraries. Our main system administrator advised us that we should have a shared library. So, I am trying to do this. I have downloaded the latest version of R and installed it on the main drive of our server in the "Program

Hello, I have a package with a namespace. Because I use Roxygen that overwrites the NAMESPACE file each time it is run, I use a R/zzz.R file with an .onLoad() and .onUnload() functions to take care of loading and unloading my shared library. The problem: if I load my library from a local directory, then the unloading of the package fails, e.g: # loads fine >library(Foo,

Hello, I am running R on a server that several people share. Previously we all had separate libraries for R. I have set up R so everyone on the server shares the same library and I downloaded the latest version of R and installed it on the main drive of our server in the "Program Files" folder (obvious enough). I changed the Environmental Variables in the advanced system setting so

I have recently installed R on DEC Alpha OSF 5.1. The first regression test (reg-test-1.R) failed with an unresolved symbol in lapack.so: 2246839:/data/h1/bifdev/apps/wga/R-1.9.1/bin/R.bin: /sbin/loader: Fatal Error: call to unresolved symbol from /data/h1/bifdev/apps/wga/R-1.9.1/modules/lapack.so (pc=0x3ffbfe22b60) Further investigation has revealed that there is NO problem with lapack.so. The