similar to: error starting R-devel with --arch ppc -- "an unusual circumstance has arisen"

Hi, If I have warnings converted to errors, and if I plot a simple plot and then resize and move the plot's window many times, I eventually get an error "Display list redraw incomplete", and after a while an endlessly repeating error "An unusual circumstance has arisen in the nesting of readline input". I cannot stop it using Ctrl-C (Ctrl-Z works though). I'm

I have an lapply function call that I want to parallelize. Below is a very simplified version of the code: url_base <- "https://cloud.r-project.org/src/contrib/" files <- c("A3_1.0.0.tar.gz", "ABC.RAP_0.9.0.tar.gz") res <- parallel::mclapply(files, function(s) download.file(paste0(url_base, s), s)) Instead of download a couple of files in parallel, I get a

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hello, I try to install pbdMPI. Compilation successful, but load fails with segfault. Is anyone can help me? R version 3.0.0 pbdMPI version 0.1-6 Intel compiler version 13.1.1 OpenMPI version 1.6.4-1 CPU Intel x86_64 # R CMD INSTALL pbdMPI_0.1-6.tar.gz .. .... checking for gcc... icc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name...

Hello R-sig-debian and (hopefully) Dirk: On Debian wheezy, I have the R packaging that CRAN (you) provide. I run into a little trouble while trying to fiddle with alternative BLAS. I know you and I went around on this last year and I think perhaps I've found something wrong in the framework, or I've just done something wrong. I installed the packages openblas-base and openblas-dev, and

The following example involves a function whose on.exit() expression both generates an error and catches the error. The body of the function also generates an error. When calling the function wrapped in a tryCatch, should that tryCatch's error function be given the error from the body of the function, since the one from the on.exit has already been dealt with? Currently the outer tryCatch

Hi, I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install) I found that it compiled and went through the tests fine. The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?

Hello, I want to use withCallingHandlers(expr, warning = function(w) { ....}), that is, to use a custom warning handler. I want this handler to replicate the behavior of the usual handler. I have problems with the mode 'options(warn = 0)' where the warnings are delayed, except if calling 'warning("message", immediate. = TRUE). Indeed, if my custom warning handler

Thanks for the report, but unfortunately I cannot reproduce on my system (either macOS nor Linux, from the command line) to debug. Did you run this in the command line version of R? I would not be surprised to see such a crash if executed from a multi-threaded application, say from some GUI or frontend that runs multiple threads, or from some other R session where a third party library

Hi everyone, I am following instructions here as I have generated the following warning: > # stuff looping through some plots with ask=TRUE Hit <Return> to see next plot: Hit <Return> to see next plot: Hit <Return> to see next plot: Hit <Return> to see next plot: Hit <Return> to see next plot: In addition: Warning message: An unusual circumstance has arisen

It's been a few days I cannot compile to get R-2.12.0 working at sparc Solaris 10. Seems the R software installation is OK, but the recommended package called Matrix stopped me, since I can finish the installation with the configure option -with-recommended-packages=no. I then run Ø Install.packages("Matrix") Then last few lines of output are the following, 28: tryCatch(expr,

This code actually happens to work for me on macOS, but I think in general you cannot rely on performing HTTP requests in fork clusters, i.e. with mclapply(). Fork clusters create worker processes by forking the R process and then _not_ executing another R binary. (Which is often convenient, because the new processes will inherit the memory image of the parent process.) Fork without exec is not

Hello all, (Thank for your reply) I have a web-application in Apache Tomcat, when i start R in this application, I used packe RSJava Code ROmegahatInterpreter interp; String [] rargs = {"--no-save"}; REvaluator e; interp = new ROmegahatInterpreter ( ROmegahatInterpreter.fixArgs(rargs),false ); e =new REvaluator (); Errors ================ R version 2.10.1 (2009-12-14)

Dear R List, I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions" that leads to a segmentation fault (tested on windows and mac os x). The registration mechanism for ".C" routines via R_registerRoutines and the R_CMethodDef structure has been enhanced recently with the addition of two fields, one

Recently, while using R-patched and now R-1.6.1 (on RedHat Linux 7.1) I've been getting the following warning in the course of everyday activity: [... some R activity ...] In addition: Warning message: An unusual circumstance has arisen in the nesting of readline input. Please report using bug.report() > The warning is difficult to reproduce because it seems to appear at random times,

Hi, <This issue was previously posted in R-help, but advised to post here as a more relevant group> I was trying to install RQuantLib in my Ubuntu machine which failed with below information : *> install.packages('RQuantLib', repos='http://cran.rstudio.com/ <http://cran.rstudio.com/>', INSTALL_opts = c('--no-lock'))* *Installing package into

Hi Luke, Thank you for your response. On 6/21/19 10:56 AM, Tierney, Luke wrote: Thanks for the suggestion. However I don't think it is the right way to go. I also don't care for what install.packages() does. Signaling a warning and then an error means someone has to catch both the error and the warning, or suppress the warning, in order to handle the error programmatically. I do care

I'm using caret to assess classifier performance (and it's great!). However, I've found that my results differ between R2.* and R3.* - reported accuracies are reduced dramatically. I suspect that a code change to kernlab ksvm may be responsible (see version 5.16-24 here: http://cran.r-project.org/web/packages/caret/news.html). I get very different results between caret_5.15-61 +

Hi, I'm using R-2.12 on a linux 64bit machine. When I run a chunk of code inside a foreach() %do% { ...} or %dopar% {...} (with doMC backend) I keep getting a segfault. Running the *same* code within lapply(something, function(x) ... ) doesn't result in any segfaults. I'll paste the output below, but I'm not sure it would be helpful. I'm more curious how to go about smoking

I got the following after running succesfully through this loop 28 million times... the loop opens text files in a directory and inserts line by line into a database... *** caught segfault *** address 0xc0000010, cause 'memory not mapped' Traceback: 1: .getGeneric(f, where, package) 2: getGeneric("coerce", where = where) 3: as(obj, "integer") 4: