Displaying 20 results from an estimated 800 matches similar to: "R packages installation error in Ubuntu"
2011 Feb 18
1
hdf5 library install issue
Dear all
I'm trying to install the hdf5 library into R. The HDF5 package is
installed in a special directory, distributed accross my cluster:
/share/apps/HDF5
So i put the args option to the configure command as i read in previous
post in the list:
jerome]# R CMD INSTALL --configure-vars='LDFLAGS=-L/share/apps/HDF5/lib'
--configure-args='--with-hdf5=/share/apps/HDF5'
2012 Feb 23
4
saving all data in r object
I have 100 data files, which contains very huge data sets of location
details ( e.g latitude, longitude, time, temp)
Now I would like to save the all data of these 100 files in r object, so I
can reload data any time.
* Every file has different length of data
latitude <- NULL
longitude <- NULL
time <- NULL
temp <- NULL
for ( i in 1:100) {
data<-
2010 Mar 03
1
linking hdf5, requires setting LD_LIBRARY_PATH
I am writing an R package to interface to hdf5 files (yes I know one
exists, the issue will be demonstrated using that package). I tend to like
to build/install things locally so that aspects of the system I am working
on don't cause problems later when attempting to install elsewhere. To
this end, I build and install the hdf5 libraries w/out incident:
tar xzf hdf5-1.8.4.tar.bz2
cd hdf5-1.8.4
2007 Dec 05
1
Installing hdf5
Hello,
I want to install hdf5 libraries for R and I get the same error as posted
below whether I try install.packages("hdf5") from R command prompt or the
command line installation below. I would appreciate if any one could help me
on this.
[alamj@thor hdf5]$ ./configure --with-hdf5=/bluejay/apps/HDF5-1.6.6/x86_64
checking for gcc... gcc
checking for C compiler default output... a.out
2009 Nov 13
1
R and HDF5 Question
Hello All,
I just signed up to this list, so I apologize if this question has been
asked before.
I am trying to load an hdf5 file into R and running into some problems. Here
are the steps I took to configure my environment:
* R 2.10.0 (x64) on Mac OS X 10.6
* hdf5 1.8.3 installed via macports
* hdf5_1.6.9.tar.gz from CRAN
I suspect the problem I am having relates to
2002 Mar 01
1
Building hdf5 on Windows
Hi all,
I try to use the hdf5 package. I downloaded the Windows binary version, and
it claims it requires hdf5dll.dll library, so I download the whole hdf5
1.4.3 package from NCSA. Unfortunatelly, it crashes R. I suspect it is
because the package was probably compiled against version 1.2 of hdf5 (as
evoked in the help file?) or any other previous version, so I downloaded the
source of the package
2012 Feb 17
1
Plotting issue
I have two different datasets
1) is in monthly format (obs)
2) yearly format (model)
in obs I have 84 files ( 2003:2009)for different months & in model I have 4
different files which has yearly data (2005:2008)
So for calculating my requirement I need these both data sets.
The sample calculations are as follows
file_o<-list.files(path=' ', pattern="0.2.text") #
2012 Mar 07
4
add data from .RData file
I got two .RData file e.g data.2005.RData & data.2006.RData
I would like to combine these two different data set and make single RData
file.
in both file there are some NULL files are also available and I would like
to clear this NULL files also.
$ : NULL
$ : NULL
$ : num [1:43285, 1:8] -21.1 -21.1 -24.9 -24.9 -24.9 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : NULL
..
2014 Dec 05
1
FW: samba 2.2.7a tech issue
________________________________
From: Uday Mhatre<mailto:uday_mhatre at hotmail.com>
Sent: ?05-?12-?2014 12:58
To: Andrea Venturoli<mailto:ml at netfence.it>
Subject: RE: [Samba] samba 2.2.7a tech issue
Just wondering if these samba versions are backward compatible with fedora14 and other Linux distributions.
Regards,
Uday
________________________________
From: Uday
2012 Apr 04
3
spaghetti plots in R
I would like to plat some spaghetti plots from my data , ma data is as
follows
ak[1:3,]
[,1] [,2] [,3] [,4] [,5] [,6] [,7]
[,8] [,9]
[1,] 0.3211745 0.4132568 0.5649930 0.6920562 0.7760113 0.8118568 0.8609301
0.9088819 0.9326736
[2,] 0.3159234 0.4071270 0.5579212 0.6844584 0.7684690 0.8243702 0.8677043
0.8931288 0.9261926
[3,] 0.3075260 0.3993699
2003 Mar 18
1
Building hdf5 for ms-windows
I am trying to build hdf5 for ms-windows. I downloaded the hdf5_1.4.7.tar.gz, gunzipped it and got a tar file. I extracted everything into a directory tree called hdf5. I also found a Makevars.win and libhdf5.def in the R help archives from March 2002. I put those two in hdf5 as well.
I issued the command Rcmd build --binary hdf5
but got this message complaining it can''t find
2013 Feb 04
1
Problem loading hdf5 file
*Hi everyone, I am a new subscriber, so I hope I'm posting in the right way.
I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5 R
package; in downloaded a small sample file from the hdf5 website and I
could correctly load it. But when I try to load my file:
*
require(hdf5)
rm(list=ls())
ls()
hdf5load("my_file.h5", verbosity=3)
*I get this error message:
*
2002 Mar 01
1
HDF 5 install - how to pass configure flag to the R CMD command
The basic question is: How can I pass configure script command line flags
from the R CMD command?
Now I try to install the HDF5 package on Linux (SuSE 7.3).
I got hdf5 libraries installed in /usr/local/hdf5 (man/lib/bin).
I understood to install packages the following way:
as root# R CMD INSTALL hdf5_1.4.7.tar.gz
Installing source package `hdf5' ...
checking for gcc... gcc
checking for
2011 Dec 01
2
HDF5 compound data types and h5r/hdf5 R packages
Hi there,
I have a Java process that writes HDF5 files with the following
approximate structure:
group "xxx" {
group "yyy" {
dataset {}
dataset {}
}
group "zzz" {
dataset {}
dataset {}
}
}
where dataset is a rank one dataspace having a compound datatype defined as:
H5T_UNIX_TIME, float, float, float, float
I
2009 Aug 24
1
hdf5 package segfault when processing large data
Hi there,
I am currently working on something that uses hdf5 library. I think
hdf5 is a great data format, I've used it somewhat extensively in
python via PyTables. I was looking for something similar to that in R.
The closest I can get is this library: hdf5. While it does not work
the same way as PyTables did, but it's good enough to let them
exchange data via hdf5 file.
There is just 1
2011 Mar 04
2
Fixing the HDF5 package: the on.exit mystery
Dear all,
I'm trying to fix a subtle bug in the hdf5 package. This package provides an
interfaces to the HDF5 library and hence allows one to load data into R from
files in the HDF5 format. The bug appeared during a period in which R changed
but the package did not.
I include below both the R and C code, stripped of everything except what is
needed to show the bug. What is supposed to
1999 Oct 06
1
uploaded hdf5 and R 0.65.1 RPMs
Dear everybody:
HDF5, a dataset formatting library, and R that is built with it, have
been uploaded to ftp://ftp-fis.iarc.fr/pub/incoming. The R RPM uses the
spec file created by Martyn Plummer as a starting point, and makes only
a few trivial changes.
-rw-rw-r-- 1 ftp 100 3416612 Oct 6 17:45
R-base-with-hdf5-0.65.1-1.i386.rpm
-rw-rw-r-- 1 ftp 100 2300453 Oct 6 17:48
2014 Oct 29
1
Upgrade to CentOS6.6: mpich dep error
Hello there,
I'm checking if I can upgrade safely from CentOS6.5 to 6.6 using yum,
and here's what it says:
=====================
[snip]
--> Finished Dependency Resolution
--> Running transaction check
---> Package kernel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased
---> Package kernel-devel.x86_64 0:2.6.32-431.23.3.el6.centos.plus will be erased
---> Package
2000 Feb 01
1
hdf5
Dear R-user group
I am currently running R-0.90.1-1 for LinuxPPC on my PowerBook. Few days
ago
I have seen at CRAN that a new R-package exists, namely
R-base-with-hdf5-0.90.1-2.
Sorrowly, I could not find any explanation, what the difference to the
other package is.
I have downloaded the "Introduction to HDF5 Release 1.2" from
hdf.ncsa.uiuc.edu/HDF5.
It seems that HDF5 is a data
2001 Mar 23
2
Memory problems, HDF5 library and R-1.2.2 garbage collection
Hello:
I've recently started using R to process data in HDF5 format. My files
come in 1.5MB chunks, but they can be as big as 50MB.
The problem I am facing with R-1.2.2 is that when I try to load 50 of
the 1.5MB HDF5 files (using the hdf5 library) in a loop, my Linux box
gets close to its memory limit around the file #15 (256MB RAM and
256MB swap). This happens even if I load file ->