similar to: Help with R2 OpenBUGs

Hi, I'm working on the codes below however every time I run them when they get to OpenBUGS I keep getting the error message: array index is greater than array upper bound for hab. Any help would be greatly appreciated, Suzie Codes: ungulate <- read.csv(file.choose ()) #ungulate ungulate <- as.matrix(ungulate);colnames(ungulate)<-NULL;rownames(ungulate)<-NULL

Dear list, I'm trying to embed OpenBUGS in an R package for use of it on 64-bit Linux. In order to get the CLI working one has to compile C code contained in $OpenBUGS/Manuals/CBugs.html (copied to say CBugs.c) using gcc -m32 -o bugs CBugs.c -ldl I put the OpenBUGS distribution in the ./inst subdirectory of the package root. Where should I now put the CBugs.c and how

Hi All, I am trying to figure out how to use R-Coda with the output from OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS. I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS' "bugs" and have used "read.bugs" to build the coda object. I can successfully switch to OpenBugs and run the same model and get the basic summary

Hello ALL! I am running Linux, Fedora 15 64-bits, and R on it. I need to use WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project, to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode), not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I tried briefly, and realized few minor

Hello list, I?ve been trying to get OpenBUGS running on my mac using the wine emulator. I can run Openbugs just fine by doing: wine ~/OpenBUGS312/OpenBUGS.exe In the terminal, so OpenBUGS works. When I try to run the schools example using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no log, no script, no output of any sort. The rbugs () call makes the init,

Hi all, I've managed to get JAGS working on my Ubuntu Hardy Linux with a 32-bit computer and AMD processors using R 2.8.1. JAGS is great. I've read that JAGS is the fastest, but that hasn't been my experience. At any rate, I have more experience with WinBUGS under Windows and would like a version of that working as well. It seems like I've read a lot on the subject and tried a

I'm back! I've just learned that, on a fully updated Fedora Core Linux5 sytem, the working solution to access Winbugs under wine via the R package "rbugs" no longer works. Here was my last post on this topic (with the formerly working solution) from January. http://finzi.psych.upenn.edu/R/Rhelp02a/archive/68497.html Currently, what happens is that WinBUGS starts up, but just

This is slightly off-topic, but there was a discussion about MCMC a couple of weeks ago. OpenBUGS can operate from R, at least in Windows (there are some problems in Linux at the moment). The interface with R is one are that there are plans to work on: it's a bit basic at the moment. Bob -- Bob O'Hara Dept. of Mathematics and Statistics P.O. Box 68 (Gustaf H??llstr??min katu 2b)

Dear All, I am trying to use the glmmBUGS package with OpenBUGS under Linux. Here is a short list of code I modified from the diseasemapping package document: ---------------------------------------- library(diseasemapping) data(popdata) data(casedata) model = getRates(casedata, popdata, ~age*sex, breaks=seq(0, 90, by=10) ) ontario = getSMR(popdata,model, casedata) spplot(ontario,

I installed wine 1.2.3 on Mac OS X 10.6.8 with the hopes of getting OpenBUGs running, but no success. It seems like OpenBUGs installs properly, but when I try to open it, I get the following: wine: cannot find L"C:\\windows\\system32\\OpenBUGS.exe What does this mean/how can I fix it?

After so many questions and a considerable delay (almost entirely my fault), the BRugs package version 0.7-4 has been released yesterday. The BRugs package is available from CRAN master already as source and in binary form for Windows and will be synced by the mirrors shortly. Note the following changes (more details in the NEWS file): BRugs works on Linux now BRugs now supports 64-bit R on

After so many questions and a considerable delay (almost entirely my fault), the BRugs package version 0.7-4 has been released yesterday. The BRugs package is available from CRAN master already as source and in binary form for Windows and will be synced by the mirrors shortly. Note the following changes (more details in the NEWS file): BRugs works on Linux now BRugs now supports 64-bit R on

Hello, I'm running R version 3.4.2 on Windows. I have a program written in BUGS which I can successfully run from the R2WinBUGS package. I would also like to try and use the same package to use OpenBUGS (version 3.2.3) rather than WinBUGS. The initial output looks ok (shown below), but the OpenBUGS executable is never started. Instead I see a process running called ?BugsHelper.exe *32? in

Hi. I am trying to analyze with BRugs the Box-Tiao variance components example in WinBUGS. The output from BRugs, mean sd MC_error val2.5pc median val97.5pc start sample sigma2.btw 681.9 1161 10.89 0.7016 253.8 4232 25001 100000 sigma2.with 4266.0 1246 4.92 2480.0000 4057.0 7262 25001 100000 doesn't match the output from WinBUGS, node mean

Hi, I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat Enterprise Linux machine. Following various peoples' suggestions... This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe Within R, however, I get this: (setup the example from ?bugs, then....) R> schools.sim <- bugs(data, inits, parameters, model.file, n.chains=3,

Greetings: I'm going to encourage some students to try Bayesian ideas for hierarchical models. I want to run the WinBUGS and R examples in Tony Lancaster's An Introduction to Modern Bayesian Econometrics. That features MS Windows and "bugs" from R2WinBUGS. Today, I want to ask how people are doing this in Linux? I have found a plethora of possibilities, some of which are not

I've run into persistent problems with OpenBUGS crashing when using BRugs .53 and .71, and am hoping someone has suggestions. There is obviously something unusual going on in my environment, but I'm at a loss as to where to begin to try to solve it. In a nutshell, what happens is that, as soon as I call "modelCheck()" in BRugs, it gets an error or crashes ... but only some of

I am trying to figure out if it is possible to run winBUGS from within R, using R2winBUGS, without having winBUGS spawn any windows (basically - 'true' batch - no GUI actions at all). The reason being I have a machine which I (and several others) ssh/telnet into, and would like to run winBUGS without having to mount a virtual desktop of any kind. I've looked through the r2winBUGS

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

Hi, this is the first announcement of a *developer version* of the R package BRugs, which is based on OpenBUGS 2.1.0. OpenBUGS 2.1.0 has been released earlier this week (http://mathstat.helsinki.fi/openbugs/). BRugs contains a complete OpenBUGS installation as well as R code to access OpenBUGS functionality from R. Simply install the package, load it and say ?BRugs and ?BRugsFit