similar to: bug + insufficient doc in R CMD INSTALL (PR#5703)

Hi I used the command R CMD INSTALL ncdf to install ncdf package in linux. Can somebody explain to me what might be wrong. Thanks. Below is the error. * Installing *source* package 'ncdf' ... Special note: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for

I imagine this "where are your header files" problem comes up in other packages, so I'm asking this as a general R question. How should configure scripts be re-written so they look in more places? Briefly, the problem is that Fedora-Extras installs the header files in a subdirectory /usr/include/netcdf-3 rather than /usr/include: # rpm -ql netcdf-devel /usr/include/netcdf-3

Greetings all, I recently tried to install RNetCDF from within R (install.packages) on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already installed). This resulted in an error because the netcdf header files are installed in /usr/include/netcdf-3 rather than /usr/include which is where RNetCDF looks for them. This problem was described in a 2006 post (see below), but no

Greetings. I am attempting to add NetCDF libraries within R, and have failed. We have R version 2.8, and are running on a 64-bit Redhat Linux 2.6.18 kernel: Red Hat Enterprise Linux Client release 5.2 (Tikanga) Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5 09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux I have run the installation instructions found at

Dear R communities Could you please help me with the problem I encounter while trying to install the ncdf package? download.packages("ncdf", "/home/user/soft/R/library/") cd /home/user/soft/R/library R CMD INSTALL ncdf_1.6.tar.gz # fail sudo R CMD INSTALL ncdf_1.6.tar.gz # fail cd /home/user/soft/ # download

Friends, I am a newbie to R. Just installed and started with R. I installed netcdf library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/local/netcdf/include -with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz The installation was successful. But when i try to use ncdf inside R, i

Friends, I tried to install ncdf package in ubuntu with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include -with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz The installation was stopped throwing the following error. I tried to google it but didnt find any solution. someone kindly write me what is going wrong. **

Hi All, i'm on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz *

Hi All, I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 I then tried to install ncdf package in R R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz I get this

Hi All, i'm on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz *

Hi, in my package, I've got a 'configure' file in the root, e.g. aroma.affymetrix/configure. (I've also got a configure.win, which works just fine on Windows). This file must be executable (has a proper file mode) for 'R CMD INSTALL'/install.packages() to work, otherwise one gets: * installing *source* package 'aroma.affymetrix' ... ERROR: 'configure'

I was trying to install software named ncview on a centos 5.3 box. ./configure command gave this error: Error, the X libraries and development headers must be installed for ncview to work! I was surprised that there were many google hits related to ubuntu, none for centos. So even though I eventually figured out what to do, I decided to share this with the list anyhow, so maybe next time I

This patch makes it possible do module installs in this way: $ R INSTALL --with-hdf5=/packages . Is there a better/conventional way to do this kind of thing that I'm not seeing? diff -c -r1.29 INSTALL.in *** src/scripts/INSTALL.in 2000/01/24 19:48:48 1.29 --- src/scripts/INSTALL.in 2000/01/26 01:26:11 *************** *** 107,112 **** --- 107,116 ---- lib=${2}; shift ;;

On 09/17/14 22:31, Charles Lepple wrote: > On Sep 12, 2014, at 5:15 PM, Stan Gammons <sg063015 at gmail.com> wrote: > >> On 09/11/14 22:34, Charles Lepple wrote: >>> On Sep 11, 2014, at 11:04 PM, Stan Gammons <sg063015 at gmail.com> wrote: >>> >>>> I see a libusb_get_interrupt message in the log. Could that be the problem? >>> Yes, it

On Sep 18, 2014, at 10:09 PM, Stan Gammons <sg063015 at gmail.com> wrote: > > On 09/17/14 22:31, Charles Lepple wrote: >> Can you rebuild the libusb1 pkg as a port, with the DEBUG flag turned on? > > > Is --enable-debug the way one turns it on? I modified the Makefile as shown below, then did a make and make install. I am not sure how to tell OpenBSD to use that

--=-=-= Included below are: 1) Diffs to to remove HDF5 from R 2) Diffs to pass thru --with-* options to a module's configure script during "R INSTALL". (To reiterate a plea for this capability...) This applies only to Unix, the Windows (mingw32 in my case) build approach of passing in make variables like *-CFLAGS and *-LDFLAGS works fine. The only hitch

On Sep 19, 2014 5:55 AM, "Charles Lepple" <clepple at gmail.com> wrote: > > On Sep 18, 2014, at 10:09 PM, Stan Gammons <sg063015 at gmail.com> wrote: > > > > > On 09/17/14 22:31, Charles Lepple wrote: > >> Can you rebuild the libusb1 pkg as a port, with the DEBUG flag turned on? > > > > > > Is --enable-debug the way one turns it

Just rebuilt and installed/world kernel: FreeBSD 4.8-STABLE #0: Fri Apr 11 14:34:37 EDT 2003 Using the latest Makefile for squid25: # fgrep \$FreeBSD /usr/ports/www/squid/Makefile # $FreeBSD: ports/www/squid/Makefile,v 1.100 2003/04/09 08:31:30 adrian Exp $ Modified with: # fgrep CONFIGURE_ARGS Makefile |fgrep -v \# CONFIGURE_ARGS= --bindir=${PREFIX}/sbin --sysconfdir=${PREFIX}/etc/squid \

On Jul 30, 2013, at 10:39 AM, Pavel Potcheptsov (EKTOS) wrote: > Is this a trouble? Driver use path /var/state/ups/ but upsd use path /var/db/nut/upsd.pid Yes, the driver and upsd need to agree on the path to the socket. From the FreeBSD ports tree: /usr/ports/sysutils/nut/Makefile: STATEDIR?= /var/db/nut [...] CONFIGURE_ARGS= --sysconfdir=${PREFIX}/etc/nut \

On Mon, 30 Mar 2020 at 03:47, Carlos Lopez <clopmz at outlook.com> wrote: > Good morning, > > I have detected two strange problems with unbound under CentOS8 (fully > patched). I have tried same configuration in an OpenBSD host, and these > problems do not appear. > > a/ Error mesage ?connection refused?. I am using this unbound server to > resolv DNS records for our