similar to: Proposal: 'global' package refactoring

I see something new and unexpected here. > update.packages() trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 163467 bytes opened URL .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ......... downloaded

I'm seeing an odd error message when running R CMD check gregmisc with R-1.9.0beta_2004-03-22.tar.gz * checking package dependencies ... WARNING Error in switch(type, code = c("R", "r", "S", "s", "q"), data = c("R", : Argument "type" is missing, with no default Execution halted See the information on DESCRIPTION

...unless its me missing something... > help.search("prompt", agrep=F) Error: couldn't find function ".class1" > traceback() 12: initialize(value, ...) 11: initialize(value, ...) 10: new("ObjectsWithPackage", value, package = pkg) 9: metaNameUndo(unique(these), prefix = "M", searchForm = searchForm) 8: methods:::getGenerics(ns) 7:

I did: ./configure --with-blas='-framework vecLib' --with-lapack --with-aqua make sudo make install sudo make install-aqua Everything seems to be OK (some warnings about multiple definitions of some symbols). However: bass$ /Library/Frameworks/R.framework/Resources/bin/R Fatal error: unable to open the base package I got the same message when clicking on R.app in /Applications This

Has anyone successfully check/build tseries for MacOSX? It seems like there is the same problem with symbols duplications. The -m like option does not seem to help. stefano

With the current version from rsync (8/16, 19:00) I get make[3]: *** No rule to make target `helpsearch.c', needed by `Makefile'. Stop. make[2]: *** [R] Error 1 make[1]: *** [R] Error 1 make: *** [R] Error 1 === Jan de Leeuw; Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 9432 Boelter Hall, Box

Small things, mostly. 1. Buildproblem. Well-known and annoying. Build fails if debugging is on (which is the default) because Debugging.h breaks devQuartz.c compiles. If debugging is switched off on the command line or in the environment, then devQuartz.c builds, but aquaconsole.c does not compile, because it needs Debugging.h. I do not want to edit Apple system files, and not files in the R

RAqua now builds fine, but for some reason tcl/tk support cannot be compiled in. I get checking for /Library/Frameworks/Tcl.framework/tclConfig.sh... /Library/Frameworks/Tcl.framework/tclConfig.sh checking for /Library/Frameworks/Tk.framework/tkConfig.sh... /Library/Frameworks/Tk.framework/tkConfig.sh checking whether compiling/linking Tcl/Tk code works... no This is with configure

Dear R specialists, I have a multivariate statistics question that I want to submit to the R community (which conveys a very good statistical knowledge). I need to perform an optimal scaling based on a discrete variable and an ordinal variable. The discrete variable, Area, defines a geographical area. The ordinal variable, EducationLevel, describes the education level of individuals (the

R-devel has the --with-lapack flag for configure. If you build R with --with-blas="-framework vecLib" --with-lapack="--framework vecLib" then the build goes through, using the native optimized BLAS and Lapack in /System/Library/Frameworks/vecLib.framework. Also, it works, in the sense that it does eigenvalue problems correctly. I don't have any timings yet, because I

What I am doing : create a simple correlation matrix on 41 variables, then plot an heatmap with this program : library(gplots) mat<-cor(temp.alln,use="pairwise.complete.obs") hm<-heatmap.2(mat,symm=T) HM<-format(round(mat[hm[[1]],hm[[2]]],2)) library(RColorBrewer) brewer.pal(10,"Spectral")->mp heatmap.2(mat, symm = TRUE, col = mp,

I have build R-1.6.0 on Jaguar (actually on 10.2.2), using gcc 3.1 from Apple, g77 3.1 from fink, ATLAS from fink. It passes all checks OK. I also re-compiled the 233 packages listed below with the same setup. I have NOT tested all these packages in any detail. A tar.gz file with the whole /usr/local/lib/R will be on ftp://gifi.stat.ucla.edu on Tuesday. It will NOT include anything from fink

While builds and validations of R-1.6.2beta_2002-12-20 were successful on several systems, there were a few failures: ------------------------------------------------------------------------ Apple Darwin 6.2 (MacOS 10.2.2) with gcc-3.2.1: gcc -dynamiclib -flat_namespace -undefined suppress -o .libs/libgslcblas.0.0.0.dylib sasum.lo saxpy.lo ... isamax.lo izamax.lo xerbla.lo -lc -install_name

Pretty soon, hopefully, the RAqua version will make the Darwin/X11 version unnecessary. In the meantime, for convergence, I'll modify the Gifi version in various ways. -- It's 1.7.1 -- It no longer supports gnome -- It still uses Tcl/Tk for X11 (using 8.5 from CVS) !! It no longer uses anything from fink (readline and dlcompat as on Stefano's site, jpeg and png and teTeX from

I have a version of R-devel which is configured with the flags configure --with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh --with-tk-config=/Library/Frameworks/Tk.framework /tkConfig.sh --enable-R-shlib --with-aqua --without-x TCLTK_LIBS="-framework Tcl -framework Tk" TCLTK_CPPFLAGS="-I/Library/Framewor ks/Tcl.framework/Headers

If one installs the CLI and RAqua versions, by saying both "make install" and "make install-aqua", then packages that use libR.dylib get their symbols from /Applications/StartR.app/RAqua.app/Contents/Frameworks/libR.dylib and not from /usr/local/lib/R/bin/libR.dylib. That's unfortunate, because the first is likely to change, and the second is not. For instance, what

This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. ------_=_NextPart_000_01C3BE9C.3FB5BC1A Content-Type: text/plain; charset="iso-8859-1" There is a small bug in the implementation of \preformatted in R 1.8.0: The closing "\end{verbatim}" needs to be followed by a newline, since my latex

Dear Greg, Thanks for the new release. The decomposition of the SSQ is just what I need! Regards, Martin. Martin Hoyle, School of Life and Environmental Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK Webpage: http://myprofile.cos.com/martinhoyle >>> gregory_r_warnes at groton.pfizer.com 10/30/02 07:16PM >>> Version 0.7.3 of the gregmisc package

I have a revised version of the gregmisc package, which I've converted into a package bundle each of which has a namespace: gplots, gmodels, gdata, gtoools. Of course, there are interdependencies among these namespaces: gsun374: /tmp [11]> cd gregmisc/ gsun374: gregmisc [12]> grep import */NAMESPACE gdata/NAMESPACE:importFrom(gtools, odd, invalid, mixedsort)

gcc 3.2.1 is out and avoids the warnings about -I/usr/local/include shown by 3.1 and 3.2. Unfortunately, it seems to generate invalid code on 32-bit Solaris 2.7. (64-bit code via -m64 is OK.) On two separate installations example(Bessel) crashes in graphics.c because dd is not being passed down from clipText correctly. I don't think that is all, as compiling graphics.c under gcc-3.2 leads