beebe@math.utah.edu
2002-Dec-26 17:40 UTC
[Rd] R-1.6.2beta_2002-12-20: build problems (PR#2395)
While builds and validations of R-1.6.2beta_2002-12-20 were successful on several systems, there were a few failures: ------------------------------------------------------------------------ Apple Darwin 6.2 (MacOS 10.2.2) with gcc-3.2.1: gcc -dynamiclib -flat_namespace -undefined suppress -o .libs/libgslcblas.0.0.0.dylib sasum.lo saxpy.lo ... isamax.lo izamax.lo xerbla.lo -lc -install_name /usr/local/lib/libgslcblas.0.dylib -compatibility_version 1 -current_version 1.0 gcc: suppress: No such file or directory gcc: /usr/local/lib/libgslcblas.0.dylib: No such file or directory gcc: 1: No such file or directory gcc: 1.0: No such file or directory gcc: unrecognized option `-compatibility_version' gcc: unrecognized option `-current_version' ------------------------------------------------------------------------ Sun Solaris 2.7 and 2.8 with gcc-2.95.3: gcc -shared sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc -Wl,-rpath -Wl,-soname -Wl,libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0 /usr/local/sparc-sun-solaris2.7/bin/ld: cannot open libgslcblas.so.0: No such file or directory collect2: ld returned 1 exit status make[2]: *** [libgslcblas.la] Error 1 I tried a restart with a newer version of libtool, that failed as well: make LIBTOOL=/usr/local/bin/libtool /usr/ccs/bin/ld -G -h libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0 sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc -rpath ld: fatal: option -dn and -h are incompatible ld: fatal: option -dn and -P are incompatible ld: fatal: option -dn and -G are incompatible ld: fatal: Flags processing errors ------------------------------------------------------------------------ Compaq Alpha OSF/1 5.1: The herm tests all fail (gcc 2.9-gnupro-99r1), but that is from a known gcc code-generation error. However, I also got this failure: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -mieee -mfp-rounding-mode=d -g -O2 -c test_rotg.c mips-tfile, /tmp/cc0u7O0L.s:8107 Invalid .stabs/.stabn directive, value not found line: #.stabs "c_expected:V12",38,0,120,$LC46 If I use "make -i check", then the tests proceed, and and I get 53716 passes. ------------------------------------------------------------------------ ------------------------------------------------------------------------------- - Nelson H. F. Beebe Tel: +1 801 581 5254 - - Center for Scientific Computing FAX: +1 801 581 4148 - - University of Utah Internet e-mail: beebe@math.utah.edu - - Department of Mathematics, 110 LCB beebe@acm.org beebe@computer.org - - 155 S 1400 E RM 233 beebe@ieee.org - - Salt Lake City, UT 84112-0090, USA URL: http://www.math.utah.edu/~beebe - -------------------------------------------------------------------------------
I don't see this, but then again several strange things are going on here. The R build is making a GSL version of BLAS in /usr/local/lib ? Also, for some reason, gcc does not properly recognize its flags. Now this looks like a --without-blas build. I am using ATLAS from fink (somewhat reluctantly, because I should be using BLAS from the vecLib framework), and this may explain the difference. I'll try --without-blas, but with ATLAS R-1.6.2beta_2002-12-25 builds fine. Also, justbchechking for the gcc, I have cabledoc107:Developer/R/R-1.6.2] deleeuw% gcc -v Reading specs from /usr/libexec/gcc/darwin/ppc/3.1/specs Thread model: posix Apple Computer, Inc. GCC version 1173, based on gcc version 3.1 20020420 (prerelease) On Thursday, December 26, 2002, at 08:39 AM, beebe@math.utah.edu wrote:> While builds and validations of R-1.6.2beta_2002-12-20 were > successful on several systems, there were a few failures: > > ----------------------------------------------------------------------- > - > Apple Darwin 6.2 (MacOS 10.2.2) with gcc-3.2.1: > > gcc -dynamiclib -flat_namespace -undefined suppress -o > .libs/libgslcblas.0.0.0.dylib sasum.lo saxpy.lo ... isamax.lo > izamax.lo xerbla.lo -lc -install_name > /usr/local/lib/libgslcblas.0.dylib -compatibility_version 1 > -current_version 1.0 > gcc: suppress: No such file or directory > gcc: /usr/local/lib/libgslcblas.0.dylib: No such file or directory > gcc: 1: No such file or directory > gcc: 1.0: No such file or directory > gcc: unrecognized option `-compatibility_version' > gcc: unrecognized option `-current_version' >==Jan de Leeuw; Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu homepage: http://gifi.stat.ucla.edu ------------------------------------------------------------------------ ------------------------- No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au ------------------------------------------------------------------------ -------------------------
No, R builds also fine with the --without-blas flag. Did you use a --with-blas=something flag ? On Thursday, December 26, 2002, at 08:39 AM, beebe@math.utah.edu wrote:> While builds and validations of R-1.6.2beta_2002-12-20 were > successful on several systems, there were a few failures: > > ----------------------------------------------------------------------- > - > Apple Darwin 6.2 (MacOS 10.2.2) with gcc-3.2.1: > > gcc -dynamiclib -flat_namespace -undefined suppress -o > .libs/libgslcblas.0.0.0.dylib sasum.lo saxpy.lo ... isamax.lo > izamax.lo xerbla.lo -lc -install_name > /usr/local/lib/libgslcblas.0.dylib -compatibility_version 1 > -current_version 1.0 > gcc: suppress: No such file or directory > gcc: /usr/local/lib/libgslcblas.0.dylib: No such file or directory > gcc: 1: No such file or directory > gcc: 1.0: No such file or directory > gcc: unrecognized option `-compatibility_version' > gcc: unrecognized option `-current_version' > > ----------------------------------------------------------------------- > - > Sun Solaris 2.7 and 2.8 with gcc-2.95.3: > > gcc -shared sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc > -Wl,-rpath -Wl,-soname -Wl,libgslcblas.so.0 -o > .libs/libgslcblas.so.0.0.0 > > /usr/local/sparc-sun-solaris2.7/bin/ld: cannot open libgslcblas.so.0: > No such file or directory > collect2: ld returned 1 exit status > make[2]: *** [libgslcblas.la] Error 1 > > I tried a restart with a newer version of libtool, that failed as > well: > > make LIBTOOL=/usr/local/bin/libtool > /usr/ccs/bin/ld -G -h libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0 > sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc -rpath > > ld: fatal: option -dn and -h are incompatible > ld: fatal: option -dn and -P are incompatible > ld: fatal: option -dn and -G are incompatible > ld: fatal: Flags processing errors > ----------------------------------------------------------------------- > - > Compaq Alpha OSF/1 5.1: > > The herm tests all fail (gcc 2.9-gnupro-99r1), but that > is from a known gcc code-generation error. However, I > also got this failure: > > gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -mieee -mfp-rounding-mode=d > -g -O2 -c test_rotg.c > mips-tfile, /tmp/cc0u7O0L.s:8107 Invalid .stabs/.stabn directive, > value not found > line: #.stabs "c_expected:V12",38,0,120,$LC46 > > If I use "make -i check", then the tests proceed, and > and I get 53716 passes. > ----------------------------------------------------------------------- > - > > ----------------------------------------------------------------------- > -------- > - Nelson H. F. Beebe Tel: +1 801 581 5254 > - > - Center for Scientific Computing FAX: +1 801 581 4148 > - > - University of Utah Internet e-mail: > beebe@math.utah.edu - > - Department of Mathematics, 110 LCB beebe@acm.org > beebe@computer.org - > - 155 S 1400 E RM 233 beebe@ieee.org > - > - Salt Lake City, UT 84112-0090, USA URL: > http://www.math.utah.edu/~beebe - > ----------------------------------------------------------------------- > -------- > > ______________________________________________ > R-devel@stat.math.ethz.ch mailing list > http://www.stat.math.ethz.ch/mailman/listinfo/r-devel > >==Jan de Leeuw; Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu homepage: http://gifi.stat.ucla.edu ------------------------------------------------------------------------ ------------------------- No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au ------------------------------------------------------------------------ -------------------------
ripley@stats.ox.ac.uk
2002-Dec-26 19:01 UTC
[Rd] R-1.6.2beta_2002-12-20: build problems (PR#2395)
On Thu, 26 Dec 2002, Jan de Leeuw wrote:> No, R builds also fine with the --without-blas flag. Did you use a > --with-blas=something flag ?I don't think this is a report on R! It seems to be about building libgslcblas, and there are no routines sasum.? etc in the R sources. Similarly, `make check' does not count passes, and on Solaris a command like that is never generated by R's configure.> On Thursday, December 26, 2002, at 08:39 AM, beebe@math.utah.edu wrote: > > > While builds and validations of R-1.6.2beta_2002-12-20 were > > successful on several systems, there were a few failures: > > > > ----------------------------------------------------------------------- > > - > > Apple Darwin 6.2 (MacOS 10.2.2) with gcc-3.2.1: > > > > gcc -dynamiclib -flat_namespace -undefined suppress -o > > .libs/libgslcblas.0.0.0.dylib sasum.lo saxpy.lo ... isamax.lo > > izamax.lo xerbla.lo -lc -install_name > > /usr/local/lib/libgslcblas.0.dylib -compatibility_version 1 > > -current_version 1.0 > > gcc: suppress: No such file or directory > > gcc: /usr/local/lib/libgslcblas.0.dylib: No such file or directory > > gcc: 1: No such file or directory > > gcc: 1.0: No such file or directory > > gcc: unrecognized option `-compatibility_version' > > gcc: unrecognized option `-current_version' > > > > ----------------------------------------------------------------------- > > - > > Sun Solaris 2.7 and 2.8 with gcc-2.95.3: > > > > gcc -shared sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc > > -Wl,-rpath -Wl,-soname -Wl,libgslcblas.so.0 -o > > .libs/libgslcblas.so.0.0.0 > > > > /usr/local/sparc-sun-solaris2.7/bin/ld: cannot open libgslcblas.so.0: > > No such file or directory > > collect2: ld returned 1 exit status > > make[2]: *** [libgslcblas.la] Error 1 > > > > I tried a restart with a newer version of libtool, that failed as > > well: > > > > make LIBTOOL=/usr/local/bin/libtool > > /usr/ccs/bin/ld -G -h libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0 > > sasum.lo ... xerbla.lo -L/usr/local/lib -lm -lc -rpath > > > > ld: fatal: option -dn and -h are incompatible > > ld: fatal: option -dn and -P are incompatible > > ld: fatal: option -dn and -G are incompatible > > ld: fatal: Flags processing errors > > ----------------------------------------------------------------------- > > - > > Compaq Alpha OSF/1 5.1: > > > > The herm tests all fail (gcc 2.9-gnupro-99r1), but that > > is from a known gcc code-generation error. However, I > > also got this failure: > > > > gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -mieee -mfp-rounding-mode=d > > -g -O2 -c test_rotg.c > > mips-tfile, /tmp/cc0u7O0L.s:8107 Invalid .stabs/.stabn directive, > > value not found > > line: #.stabs "c_expected:V12",38,0,120,$LC46 > > > > If I use "make -i check", then the tests proceed, and > > and I get 53716 passes. > > ----------------------------------------------------------------------- > > - > > > > ----------------------------------------------------------------------- > > -------- > > - Nelson H. F. Beebe Tel: +1 801 581 5254 > > - > > - Center for Scientific Computing FAX: +1 801 581 4148 > > - > > - University of Utah Internet e-mail: > > beebe@math.utah.edu - > > - Department of Mathematics, 110 LCB beebe@acm.org > > beebe@computer.org - > > - 155 S 1400 E RM 233 beebe@ieee.org > > - > > - Salt Lake City, UT 84112-0090, USA URL: > > http://www.math.utah.edu/~beebe - > > ----------------------------------------------------------------------- > > -------- > > > > ______________________________________________ > > R-devel@stat.math.ethz.ch mailing list > > http://www.stat.math.ethz.ch/mailman/listinfo/r-devel > > > > > ==> Jan de Leeuw; Professor and Chair, UCLA Department of Statistics; > Editor: Journal of Multivariate Analysis, Journal of Statistical > Software > US mail: 9432 Boelter Hall, Box 951554, Los Angeles, CA 90095-1554 > phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu > homepage: http://gifi.stat.ucla.edu > > ------------------------------------------------------------------------ > ------------------------- > No matter where you go, there you are. --- Buckaroo Banzai > http://gifi.stat.ucla.edu/sounds/nomatter.au > > ------------------------------------------------------------------------ > ------------------------- > > ______________________________________________ > R-devel@stat.math.ethz.ch mailing list > http://www.stat.math.ethz.ch/mailman/listinfo/r-devel >-- Brian D. Ripley, ripley@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595