similar to: Rtools questions

Displaying 20 results from an estimated 900 matches similar to: "Rtools questions"

2011 Feb 17
2
Rd2pdf error in R12.0
On the local machine the command R11 CMD Rd2pdf survfit.Rd works fine. R12 CMD Rd2pdf survfit.Rd fails with the message below. Converting Rd files to LaTeX ... survfit.Rd Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running 'texi2dvi' on 'Rd2.tex' failed. Messages: sh: texi2dvi: command not
2011 Mar 25
1
Rd2pdf and Rd2dvi don't find texi2dvi
Hello everybody I'm am trying to build a pdf out of the Rd files that i wrote for a package, so that I can attach it to my thesis. if i Run Rd2pdf (or Rd2dvi) I get this error massage: Hmm ... looks like a package Converting Rd files to LaTeX . Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running
2011 Mar 25
0
testing presence of pdflatex in R CMD check
The nodes of our cluster do not have pdflatex installed. When running R CMD check there on a package with no errors in documentation, then R-2.13.0-alpha and R-2.12.2 report a possible error in Rd files, while R-2.11.1 did not. The platform is 64 bit CentOS. The output of R CMD check tree_1.0-28.tar.gz under the above three versions of R contains the following. R-2.11.1 stderr sh:
2011 Nov 08
1
Rd2pdf error after 2.14 upgrade‏
> The command Rd2pdf was rather useful for opening a package's manual > when you don't have access to the Internet (by using latex to pdf > conversion). However the way the function seems to operate changed at > version 2.14 of R. The noted changes listed on CRAN for this function > are as follows (which doesn't seem like it would affect my usage as > below): >
2013 Aug 06
1
Error in building pdf manual with Rtools
Dear list, I am trying to produce a pdf manual using Rtools (version 3.1.0.1936) on Windows 8 (64-bit). I am also aware of the inconsolata issue posted in the forum (https://stat.ethz.ch/pipermail/r-devel/2013-June/066850.html), and then I have installed the patched version of R-3.0.1. However I still have some errors with the following message: R CMD Rd2pdf mypack Hmm ... looks like a package
2012 Mar 14
1
issue with Rd2pdf and \Sexpr in Rd files
Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab
2011 Jun 09
2
Rtools - "The setup files are corrupted" message when trying to install
Hi, Apologies if this is the wrong list to be sending this question to. I am trying to install a copy of the R tools required to create / compile packages on windows. After downloading Rtools from http://www.murdoch-sutherland.com/Rtools/ windows keeps complaining that "The setup files are corrupted". This has happened with both the Rtools213.exe and the Rtools212.exe downloads, and
2014 Jun 04
1
Package keyval Error: noupquote undefined
Hi, Due to a change in Rd.sty a few days ago (https://github.com/wch/r-source/commit/620eb9a#diff-3bf3d821c6faae50cd6ec931f6f63296L272), the default installation of TeXLive 2009 or 2012 no longer works when building Rd to PDF. The error log is like this: =============== Converting Rd files to LaTeX ..... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean,
2011 Nov 15
2
Problem creating reference manuals from latex
R Community, I often am in need of viewing the reference manuals of packages and do not have Internet access. I have used the code: path <- find.package('tm') system(paste(shQuote(file.path(R.home("bin"), "R")),"CMD", "Rd2pdf",shQuote(path))) someone kindly provided from this help list to generate the manuals from the latex files. This
2018 May 29
2
CentOS 7 issues with pdf manual / tex conversion
On a CentOS 7 machine, I am at a loss with respect to an inability to run a full R CMD check as anything involving tex files ends in tears. We followed the README at CRAN and installed a large number of tex-live packages on this machine. But when a manual is created, we end up with what follows below. Here, I chopped some of the error messages, the key seems to be 'Insufficient extension
2008 Nov 10
1
Rd2dvi problem.
If I execute R CMD Rd2dvi foo.Rd I get messages of the form: Converting Rd files to LaTeX ... foo.Rd Creating dvi output from LaTeX ... Saving output to 'foo.dvi' ... cp: .Rd2dvi4366/Rd2.dvi: No such file or directory Done xdvi-xaw: Fatal error: foo.dvi: No such file. Indeed if I add the --no-clean flag and then cd to the .Rd2dvi<whatever> directory, I find that there is no
2005 Feb 10
2
Problem with "R CMD Rd2dvi": Rd.sty not found
Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions
2007 Jul 23
1
Error using Rd2dvi on OSX
Hi, I run R 2.5.1 on Mac OS 10.4.10 and fail to build a package manual. Below is the transcript. The problem is a "pdflatex: command not found" error but I think that I have a fully working latex install (installed with iInstaller) as I use TeXShop with no problem. Could someone help? Jean-Pierre -----------------------------------------------------------------------------
2015 Jan 08
2
latex warning
Dear all, I am getting an R CMD check warning about the PDF manual. I am having a hard time finding out what is wrong, here is the log of the Rd2pdf call. The full check (and other) log is at https://api.travis-ci.org/jobs/46373922/log.txt?deansi=true if anybody is interested, and the package itself is here: https://github.com/metacran/r-builder/tree/bintex/rbuildertest Thanks, Best, Gabor
2000 Jun 28
1
Rd2dvi
I'm trying to use R CMD Rd2dvi and I end up at a Latex (I think) command prompt. What's missing or what am I suppose to do? Paul Gilbert _______ paul at breman:/apps/dse-versions/2000.6/dse#R CMD Rd2dvi syskern This is TeX, Version 3.14159 (Web2C 7.3) (Rd2.tex LaTeX2e <1998/12/01> Babel <v3.6k> and hyphenation patterns for american, french, german, ngerman, nohyphenation,
2017 May 22
1
[R] Somewhat obscure bug in R 3.4.0 building from source
Hi Peter, Duncan & Bert, Thank you kindly for the responses. Indeed, doc/NEWS.pdf is included in the source distribution, and then removed upon "make clean". I thought that it might be useful to report this for your benefit, but on closer inspection it appears that I'm getting errors that arise due to incompatibilities in my texlive and texinfo installations. This is the error
2020 Mar 23
3
[InstCombine] Addrspacecast and GEP assumed commutative
I'm not sure what the usual "ping time" is for llvm-dev, but may I ask if there are any updates on this? It appears that the following lines are the root cause of the reordering (https://github.com/llvm/llvm-project/blob/fdcb27105537f77c78c4473d4f7c47146ddbab69/llvm/lib/Transforms/InstCombine/InstructionCombining.cpp#L2175): // Handle gep(bitcast x) and gep(gep x, 0, 0, 0). Value
2018 May 29
2
CentOS 7 issues with pdf manual / tex conversion
On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work
2005 Apr 28
1
help files and vignettes
Hi all, I'm writing a vignette for my package, and I would like to include some of the package help files in there as well. Is there an easy way of doing so? I tried using R CMD Rdconv to generate latex files from .Rd files but I am not sure how to include these into a .Rnw file (ie the vignette source). The resulting file from Rdconv do not readily compile using latex ... The other option I
2013 Jan 01
1
Rd problems
Dear users, I'm struggling with encoding issues for documenting some functions. The Rd format is incradible simple, however, because I'm dealing with diacritic strings, I seted up encoding in several Rd files as latin1. Under R, using the checks available in the package 'tools it performs pretty well. But when check the package as cran, I got several encoding issues. Have any one